miRNA display CGI


Results 21 - 40 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30171 5' -50.5 NC_006273.1 + 135967 0.66 0.999038
Target:  5'- aGGAGGUgcugaguaacGAGGAGGCc-GAGACgCugCg -3'
miRNA:   3'- cCCUCCG----------CUUCUCUGuuUUCUG-GugG- -5'
30171 5' -50.5 NC_006273.1 + 149439 0.66 0.999038
Target:  5'- cGGGGGGCGAcggccccgAG-GGCGAGGuuauUCACCu -3'
miRNA:   3'- -CCCUCCGCU--------UCuCUGUUUUcu--GGUGG- -5'
30171 5' -50.5 NC_006273.1 + 208442 0.66 0.999038
Target:  5'- aGGGAGaUGAAGAGAUGuugccGGAUCuGCCg -3'
miRNA:   3'- -CCCUCcGCUUCUCUGUuu---UCUGG-UGG- -5'
30171 5' -50.5 NC_006273.1 + 34050 0.66 0.999038
Target:  5'- cGGAgGGCGAcaaagaGGAGugGuc--GCCGCCg -3'
miRNA:   3'- cCCU-CCGCU------UCUCugUuuucUGGUGG- -5'
30171 5' -50.5 NC_006273.1 + 157013 0.66 0.999
Target:  5'- aGGAGGagagccggcaaaGAAGAGggcGCGGAA-ACCACCg -3'
miRNA:   3'- cCCUCCg-----------CUUCUC---UGUUUUcUGGUGG- -5'
30171 5' -50.5 NC_006273.1 + 232968 0.66 0.998836
Target:  5'- cGGGAugGGUGGacguGGGGACGGauuccuGAGGCUACa -3'
miRNA:   3'- -CCCU--CCGCU----UCUCUGUU------UUCUGGUGg -5'
30171 5' -50.5 NC_006273.1 + 140844 0.66 0.998836
Target:  5'- gGGGAGgaGCGGggugGGGGugGGAAGcCC-CCg -3'
miRNA:   3'- -CCCUC--CGCU----UCUCugUUUUCuGGuGG- -5'
30171 5' -50.5 NC_006273.1 + 144333 0.66 0.998836
Target:  5'- uGGGcugucAGGCGuccGAGACGAcuGugCACg -3'
miRNA:   3'- -CCC-----UCCGCuu-CUCUGUUuuCugGUGg -5'
30171 5' -50.5 NC_006273.1 + 123630 0.66 0.998836
Target:  5'- uGGGcGuGCGGgaaAGAGAgAGAAGGCCGg- -3'
miRNA:   3'- -CCCuC-CGCU---UCUCUgUUUUCUGGUgg -5'
30171 5' -50.5 NC_006273.1 + 105552 0.66 0.998836
Target:  5'- cGGGAGGCGguGAuGuCAcc-GACCAUg -3'
miRNA:   3'- -CCCUCCGCuuCU-CuGUuuuCUGGUGg -5'
30171 5' -50.5 NC_006273.1 + 71833 0.66 0.998836
Target:  5'- -uGAGaCGcAGGAGACGcgGGACCGCa -3'
miRNA:   3'- ccCUCcGC-UUCUCUGUuuUCUGGUGg -5'
30171 5' -50.5 NC_006273.1 + 111507 0.66 0.998836
Target:  5'- aGGGAGaaGAGGGGACAcgcGAGuaaGCCauGCCg -3'
miRNA:   3'- -CCCUCcgCUUCUCUGUu--UUC---UGG--UGG- -5'
30171 5' -50.5 NC_006273.1 + 17137 0.66 0.998814
Target:  5'- uGGGAGaCGGAGAagaggaaGACGAAGgaaacGACgGCCg -3'
miRNA:   3'- -CCCUCcGCUUCU-------CUGUUUU-----CUGgUGG- -5'
30171 5' -50.5 NC_006273.1 + 114359 0.67 0.998599
Target:  5'- aGGGugccgcccaGGGCGAcGAcGACGucuGGACCAgCg -3'
miRNA:   3'- -CCC---------UCCGCUuCU-CUGUuu-UCUGGUgG- -5'
30171 5' -50.5 NC_006273.1 + 140802 0.67 0.998599
Target:  5'- cGGAGGuCGccGGGAGcaGCGAGGGAUC-CCg -3'
miRNA:   3'- cCCUCC-GC--UUCUC--UGUUUUCUGGuGG- -5'
30171 5' -50.5 NC_006273.1 + 118622 0.67 0.998599
Target:  5'- ---cGGCuGGAGAG-CGAGAGGCCGgCg -3'
miRNA:   3'- cccuCCG-CUUCUCuGUUUUCUGGUgG- -5'
30171 5' -50.5 NC_006273.1 + 174947 0.67 0.998322
Target:  5'- gGGGAGaugacaGCGAGcucGAgGAGGGGCCGCUg -3'
miRNA:   3'- -CCCUC------CGCUUcu-CUgUUUUCUGGUGG- -5'
30171 5' -50.5 NC_006273.1 + 101993 0.67 0.998322
Target:  5'- cGGcGGCGGAG-GAUccAAGGCCuCCa -3'
miRNA:   3'- cCCuCCGCUUCuCUGuuUUCUGGuGG- -5'
30171 5' -50.5 NC_006273.1 + 97424 0.67 0.998322
Target:  5'- cGGGGGGCGcucGAGACcGAcGAcguuCCAUCu -3'
miRNA:   3'- -CCCUCCGCuu-CUCUGuUUuCU----GGUGG- -5'
30171 5' -50.5 NC_006273.1 + 44040 0.67 0.998322
Target:  5'- aGGAGGU--AGAGcACGgccggAAAGACCGCg -3'
miRNA:   3'- cCCUCCGcuUCUC-UGU-----UUUCUGGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.