miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30171 5' -50.5 NC_006273.1 + 1030 0.68 0.994803
Target:  5'- cGGGGGGUGugcGGGGACgGGGGGugUGCg -3'
miRNA:   3'- -CCCUCCGCu--UCUCUG-UUUUCugGUGg -5'
30171 5' -50.5 NC_006273.1 + 1064 0.68 0.994803
Target:  5'- cGGGGGGUGugcGGGGACgGGGGGugUGCg -3'
miRNA:   3'- -CCCUCCGCu--UCUCUG-UUUUCugGUGg -5'
30171 5' -50.5 NC_006273.1 + 1108 0.71 0.974099
Target:  5'- cGGGAuGGCGGgcuguugcgugccGGGGACGGGGGACUcuuGCg -3'
miRNA:   3'- -CCCU-CCGCU-------------UCUCUGUUUUCUGG---UGg -5'
30171 5' -50.5 NC_006273.1 + 1209 0.73 0.941826
Target:  5'- cGGGAuGGCGAgcuguugcguggcGGGGACGGGGGACUcuuGCg -3'
miRNA:   3'- -CCCU-CCGCU-------------UCUCUGUUUUCUGG---UGg -5'
30171 5' -50.5 NC_006273.1 + 1713 0.68 0.996154
Target:  5'- aGGAGGCGAcGGcgcucGGACGGGAGcugCGCCg -3'
miRNA:   3'- cCCUCCGCU-UC-----UCUGUUUUCug-GUGG- -5'
30171 5' -50.5 NC_006273.1 + 1984 0.78 0.752275
Target:  5'- gGGGAcgacgucgcgccagcGGCGAgcggcacGGAGAC-GGAGGCCGCCg -3'
miRNA:   3'- -CCCU---------------CCGCU-------UCUCUGuUUUCUGGUGG- -5'
30171 5' -50.5 NC_006273.1 + 2555 0.7 0.981361
Target:  5'- cGGGccGCGgcGAGGCuGAGGugcucacccuaGCCACCa -3'
miRNA:   3'- -CCCucCGCuuCUCUGuUUUC-----------UGGUGG- -5'
30171 5' -50.5 NC_006273.1 + 7575 0.69 0.988336
Target:  5'- aGGGAgacgGGaCGAAGAGACGAcgcacAGcGCCAUCu -3'
miRNA:   3'- -CCCU----CC-GCUUCUCUGUUu----UC-UGGUGG- -5'
30171 5' -50.5 NC_006273.1 + 7724 0.7 0.981361
Target:  5'- gGGGAGGaGAGGAGAgAGAagaggagcgGGGCguCCg -3'
miRNA:   3'- -CCCUCCgCUUCUCUgUUU---------UCUGguGG- -5'
30171 5' -50.5 NC_006273.1 + 8134 0.73 0.941826
Target:  5'- aGGAGGuCGggGAGAgGgccugucGGAGAUgGCCg -3'
miRNA:   3'- cCCUCC-GCuuCUCUgU-------UUUCUGgUGG- -5'
30171 5' -50.5 NC_006273.1 + 14007 0.69 0.993092
Target:  5'- gGGcGGGcGCGggGuGGCGGAgcggGGAgCGCCg -3'
miRNA:   3'- -CC-CUC-CGCuuCuCUGUUU----UCUgGUGG- -5'
30171 5' -50.5 NC_006273.1 + 14496 0.68 0.996154
Target:  5'- -cGAGGCGGAGAGuaACA--AGGCUAUa -3'
miRNA:   3'- ccCUCCGCUUCUC--UGUuuUCUGGUGg -5'
30171 5' -50.5 NC_006273.1 + 17137 0.66 0.998814
Target:  5'- uGGGAGaCGGAGAagaggaaGACGAAGgaaacGACgGCCg -3'
miRNA:   3'- -CCCUCcGCUUCU-------CUGUUUU-----CUGgUGG- -5'
30171 5' -50.5 NC_006273.1 + 17381 0.7 0.982173
Target:  5'- aGGAGGgGAAGAcGCGGuugccgcgcguauGGCCGCCg -3'
miRNA:   3'- cCCUCCgCUUCUcUGUUuu-----------CUGGUGG- -5'
30171 5' -50.5 NC_006273.1 + 19213 0.72 0.946747
Target:  5'- cGGGcGGCGAuagcagcgacgAG-GACGAAAGcgGCCGCCc -3'
miRNA:   3'- -CCCuCCGCU-----------UCuCUGUUUUC--UGGUGG- -5'
30171 5' -50.5 NC_006273.1 + 20886 0.66 0.999517
Target:  5'- aGGAGGUcacagGAGGAGAacgagGAAGGuggaccgugugaaucGCCGCCa -3'
miRNA:   3'- cCCUCCG-----CUUCUCUg----UUUUC---------------UGGUGG- -5'
30171 5' -50.5 NC_006273.1 + 27114 0.66 0.999038
Target:  5'- cGGuGGUGAgcuGGGGAac-AGGGCUACCu -3'
miRNA:   3'- cCCuCCGCU---UCUCUguuUUCUGGUGG- -5'
30171 5' -50.5 NC_006273.1 + 29118 0.8 0.659505
Target:  5'- aGGGuGGCGGAGGGcCAGaaGAGGCgGCCu -3'
miRNA:   3'- -CCCuCCGCUUCUCuGUU--UUCUGgUGG- -5'
30171 5' -50.5 NC_006273.1 + 29819 0.75 0.87759
Target:  5'- uGGGAgugguGGCGGcagccacggaGGAGACGAGAGAacCUACCu -3'
miRNA:   3'- -CCCU-----CCGCU----------UCUCUGUUUUCU--GGUGG- -5'
30171 5' -50.5 NC_006273.1 + 30457 0.68 0.99552
Target:  5'- cGGcGGaUGAGGAGGCGGAGGACaGCg -3'
miRNA:   3'- cCCuCC-GCUUCUCUGUUUUCUGgUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.