miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30171 5' -50.5 NC_006273.1 + 189858 0.72 0.962291
Target:  5'- cGGcauGGCGGggGGAGACGcgucgggcGGACCGCCg -3'
miRNA:   3'- cCCu--CCGCU--UCUCUGUuu------UCUGGUGG- -5'
30171 5' -50.5 NC_006273.1 + 72693 0.73 0.937588
Target:  5'- uGGuGGGGUGAAGcacGGGCAgccGAAGGuCCACCc -3'
miRNA:   3'- -CC-CUCCGCUUC---UCUGU---UUUCU-GGUGG- -5'
30171 5' -50.5 NC_006273.1 + 147531 0.73 0.937588
Target:  5'- cGGGAGGCGAuGGGGGCGcgccGAuGACgACa -3'
miRNA:   3'- -CCCUCCGCU-UCUCUGU----UUuCUGgUGg -5'
30171 5' -50.5 NC_006273.1 + 8134 0.73 0.941826
Target:  5'- aGGAGGuCGggGAGAgGgccugucGGAGAUgGCCg -3'
miRNA:   3'- cCCUCC-GCuuCUCUgU-------UUUCUGgUGG- -5'
30171 5' -50.5 NC_006273.1 + 1209 0.73 0.941826
Target:  5'- cGGGAuGGCGAgcuguugcguggcGGGGACGGGGGACUcuuGCg -3'
miRNA:   3'- -CCCU-CCGCU-------------UCUCUGUUUUCUGG---UGg -5'
30171 5' -50.5 NC_006273.1 + 63103 0.73 0.942285
Target:  5'- cGGAGGCGGAGc-GCGAGuaccuguaucgGGACCugCa -3'
miRNA:   3'- cCCUCCGCUUCucUGUUU-----------UCUGGugG- -5'
30171 5' -50.5 NC_006273.1 + 99682 0.72 0.958743
Target:  5'- -aGGGGCGccGGGGGACuggGAGGGACCGCg -3'
miRNA:   3'- ccCUCCGC--UUCUCUG---UUUUCUGGUGg -5'
30171 5' -50.5 NC_006273.1 + 65176 0.72 0.961946
Target:  5'- uGGAuguGGCGAccguaccAGAGGCu-GAGAUCGCCg -3'
miRNA:   3'- cCCU---CCGCU-------UCUCUGuuUUCUGGUGG- -5'
30171 5' -50.5 NC_006273.1 + 139621 0.72 0.962291
Target:  5'- uGGcGuccGCGAGGAcGACGGAGGAuCCACCu -3'
miRNA:   3'- -CC-Cuc-CGCUUCU-CUGUUUUCU-GGUGG- -5'
30171 5' -50.5 NC_006273.1 + 133384 0.73 0.932653
Target:  5'- aGGAGGCGcuGGAGGCcuuGGAuccuCCGCCg -3'
miRNA:   3'- cCCUCCGCu-UCUCUGuuuUCU----GGUGG- -5'
30171 5' -50.5 NC_006273.1 + 130999 0.73 0.932653
Target:  5'- aGGAGGagGAAGAGACGcuggaaucgggGGAGACUgacGCCa -3'
miRNA:   3'- cCCUCCg-CUUCUCUGU-----------UUUCUGG---UGG- -5'
30171 5' -50.5 NC_006273.1 + 158715 0.73 0.926415
Target:  5'- cGGGucggcGGCGAugauguuccccgcgaAGgggacaacaaaaacaAGACAAGAGGCCGCCg -3'
miRNA:   3'- -CCCu----CCGCU---------------UC---------------UCUGUUUUCUGGUGG- -5'
30171 5' -50.5 NC_006273.1 + 29118 0.8 0.659505
Target:  5'- aGGGuGGCGGAGGGcCAGaaGAGGCgGCCu -3'
miRNA:   3'- -CCCuCCGCUUCUCuGUU--UUCUGgUGG- -5'
30171 5' -50.5 NC_006273.1 + 38514 0.79 0.688969
Target:  5'- aGGGAGGacgaaggaGggGAGACGAGgacgacgGGcACCACCg -3'
miRNA:   3'- -CCCUCCg-------CuuCUCUGUUU-------UC-UGGUGG- -5'
30171 5' -50.5 NC_006273.1 + 170351 0.76 0.813872
Target:  5'- aGGAGGaGAAG-GACAAGuauccgGGACCACCc -3'
miRNA:   3'- cCCUCCgCUUCuCUGUUU------UCUGGUGG- -5'
30171 5' -50.5 NC_006273.1 + 113537 0.76 0.847288
Target:  5'- cGGGcGGCGAAGAGA---AGGGCUACg -3'
miRNA:   3'- -CCCuCCGCUUCUCUguuUUCUGGUGg -5'
30171 5' -50.5 NC_006273.1 + 196863 0.74 0.89804
Target:  5'- cGGGGccGGCGAcGGGGACGAcgucGCCGCCa -3'
miRNA:   3'- -CCCU--CCGCU-UCUCUGUUuuc-UGGUGG- -5'
30171 5' -50.5 NC_006273.1 + 163129 0.74 0.916415
Target:  5'- aGGGcuccGGCuGAGGcGGCGGAGGcACCACCg -3'
miRNA:   3'- -CCCu---CCG-CUUCuCUGUUUUC-UGGUGG- -5'
30171 5' -50.5 NC_006273.1 + 196896 0.73 0.921512
Target:  5'- ---cGGCGAgcggcacGGAGAC-GGAGGCCGCCg -3'
miRNA:   3'- cccuCCGCU-------UCUCUGuUUUCUGGUGG- -5'
30171 5' -50.5 NC_006273.1 + 71640 0.73 0.925342
Target:  5'- gGGGAGGaCGAGGAGgACGucgcugcuaaACCGCCg -3'
miRNA:   3'- -CCCUCC-GCUUCUC-UGUuuuc------UGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.