miRNA display CGI


Results 1 - 20 of 538 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30172 3' -51.2 NC_006273.1 + 99270 0.66 0.998634
Target:  5'- cGCCGCUcgcgGUCAaaagcgcgaUCGCCGCCcacGGCGUCc -3'
miRNA:   3'- -UGGUGG----UAGU---------AGUGGUGGua-UUGCGG- -5'
30172 3' -51.2 NC_006273.1 + 102954 0.66 0.998634
Target:  5'- cGCgCACCGUacCGUCGuCCAUUAacAACGCCg -3'
miRNA:   3'- -UG-GUGGUA--GUAGU-GGUGGUa-UUGCGG- -5'
30172 3' -51.2 NC_006273.1 + 205580 0.66 0.998634
Target:  5'- cGCCACCAcCccaGCCACCAcAAcaggcagauCGCCa -3'
miRNA:   3'- -UGGUGGUaGuagUGGUGGUaUU---------GCGG- -5'
30172 3' -51.2 NC_006273.1 + 212164 0.66 0.998634
Target:  5'- aAUCACCGUCAUUcCCAcacggcguucccCCAUAaagucACGUCa -3'
miRNA:   3'- -UGGUGGUAGUAGuGGU------------GGUAU-----UGCGG- -5'
30172 3' -51.2 NC_006273.1 + 159196 0.66 0.998634
Target:  5'- uCCAUCAUCAUC-CUugCGUcuucucuuuccGAgGCCg -3'
miRNA:   3'- uGGUGGUAGUAGuGGugGUA-----------UUgCGG- -5'
30172 3' -51.2 NC_006273.1 + 187521 0.66 0.998634
Target:  5'- -aCGgUAUCGUCuguccgacucCCGCCGUAcgGCGCCg -3'
miRNA:   3'- ugGUgGUAGUAGu---------GGUGGUAU--UGCGG- -5'
30172 3' -51.2 NC_006273.1 + 204692 0.66 0.998634
Target:  5'- gACCACaggAUCAUaGCCGCCGgcaccGCgGCCg -3'
miRNA:   3'- -UGGUGg--UAGUAgUGGUGGUau---UG-CGG- -5'
30172 3' -51.2 NC_006273.1 + 179508 0.66 0.998634
Target:  5'- uUCACCGUCGUUgACCA-CGUAG-GCCa -3'
miRNA:   3'- uGGUGGUAGUAG-UGGUgGUAUUgCGG- -5'
30172 3' -51.2 NC_006273.1 + 112224 0.66 0.998634
Target:  5'- cACCGCCggaccugacgcuGUCGUCACUcacgcuauACCAaGACGgCa -3'
miRNA:   3'- -UGGUGG------------UAGUAGUGG--------UGGUaUUGCgG- -5'
30172 3' -51.2 NC_006273.1 + 13600 0.66 0.998634
Target:  5'- gGCCGCCGUgCuggaggGCCGCCcc-ACGCCc -3'
miRNA:   3'- -UGGUGGUA-Guag---UGGUGGuauUGCGG- -5'
30172 3' -51.2 NC_006273.1 + 198580 0.66 0.998634
Target:  5'- cACCACaCGUCGUgAgCAgCGUGACcugcuGCCg -3'
miRNA:   3'- -UGGUG-GUAGUAgUgGUgGUAUUG-----CGG- -5'
30172 3' -51.2 NC_006273.1 + 14565 0.66 0.998634
Target:  5'- cGCCGCCAaacaggcggcgUCAaagcUCAUCuguugccgcgaGCCGcUGACGCCg -3'
miRNA:   3'- -UGGUGGU-----------AGU----AGUGG-----------UGGU-AUUGCGG- -5'
30172 3' -51.2 NC_006273.1 + 87959 0.66 0.998634
Target:  5'- cGCCACCccCGaCGCCggacGCCGcgccGACGCCa -3'
miRNA:   3'- -UGGUGGuaGUaGUGG----UGGUa---UUGCGG- -5'
30172 3' -51.2 NC_006273.1 + 5570 0.66 0.998634
Target:  5'- uCCACCGUCAUCccauguuucCCACCcgAugGaaaaCCg -3'
miRNA:   3'- uGGUGGUAGUAGu--------GGUGGuaUugC----GG- -5'
30172 3' -51.2 NC_006273.1 + 195612 0.66 0.998475
Target:  5'- gGCCACCAagaaacaccggucugUgAUCugCA-CGUAGCGCa -3'
miRNA:   3'- -UGGUGGU---------------AgUAGugGUgGUAUUGCGg -5'
30172 3' -51.2 NC_006273.1 + 151339 0.66 0.998362
Target:  5'- cCCGCCG-CuUCGCgGCuCAUuuGGCGCCg -3'
miRNA:   3'- uGGUGGUaGuAGUGgUG-GUA--UUGCGG- -5'
30172 3' -51.2 NC_006273.1 + 69467 0.66 0.998362
Target:  5'- cUCAagaaCGUCGUCACCACaCGUuauaaaGCCa -3'
miRNA:   3'- uGGUg---GUAGUAGUGGUG-GUAuug---CGG- -5'
30172 3' -51.2 NC_006273.1 + 162212 0.66 0.998362
Target:  5'- -gCGCCG-CGUCuACCGCCuc--CGCCg -3'
miRNA:   3'- ugGUGGUaGUAG-UGGUGGuauuGCGG- -5'
30172 3' -51.2 NC_006273.1 + 69122 0.66 0.998362
Target:  5'- uUCugUAUCcauacUUACCACCGUGACaccgGCCg -3'
miRNA:   3'- uGGugGUAGu----AGUGGUGGUAUUG----CGG- -5'
30172 3' -51.2 NC_006273.1 + 101962 0.66 0.998362
Target:  5'- cGCgCGCCGUCgcGUCgcuugacgGCCACgCAgcaGGCGCCg -3'
miRNA:   3'- -UG-GUGGUAG--UAG--------UGGUG-GUa--UUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.