miRNA display CGI


Results 1 - 20 of 538 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30172 3' -51.2 NC_006273.1 + 88263 0.66 0.996772
Target:  5'- cUCGgCGUCcagCGCCAgCAUGACGCg -3'
miRNA:   3'- uGGUgGUAGua-GUGGUgGUAUUGCGg -5'
30172 3' -51.2 NC_006273.1 + 77520 0.66 0.996772
Target:  5'- aGCCGcCCAUCuuccaaauuuAUUACCugCugcACGCCg -3'
miRNA:   3'- -UGGU-GGUAG----------UAGUGGugGuauUGCGG- -5'
30172 3' -51.2 NC_006273.1 + 171357 0.66 0.996772
Target:  5'- cGCCACCAaa---ACCGCC---GCGCCc -3'
miRNA:   3'- -UGGUGGUaguagUGGUGGuauUGCGG- -5'
30172 3' -51.2 NC_006273.1 + 22715 0.66 0.996772
Target:  5'- --gACCGUCAggCGCCGgCAUGgaGCGUCg -3'
miRNA:   3'- uggUGGUAGUa-GUGGUgGUAU--UGCGG- -5'
30172 3' -51.2 NC_006273.1 + 78421 0.66 0.996559
Target:  5'- cGCCGCCGUCAgcgucgucguccgUGCCAUCAaucGCGUCc -3'
miRNA:   3'- -UGGUGGUAGUa------------GUGGUGGUau-UGCGG- -5'
30172 3' -51.2 NC_006273.1 + 32297 0.66 0.997678
Target:  5'- gUCACCGUCGcgACCGCCGcGACaGCg -3'
miRNA:   3'- uGGUGGUAGUagUGGUGGUaUUG-CGg -5'
30172 3' -51.2 NC_006273.1 + 21516 0.66 0.997256
Target:  5'- cGCCAgCUGUUA-CAUCGCCGgcgGGCGCUg -3'
miRNA:   3'- -UGGU-GGUAGUaGUGGUGGUa--UUGCGG- -5'
30172 3' -51.2 NC_006273.1 + 2017 0.66 0.996667
Target:  5'- uGCCACgCAUCcggAUCACCcCCAUcuccacaucuccACGCCc -3'
miRNA:   3'- -UGGUG-GUAG---UAGUGGuGGUAu-----------UGCGG- -5'
30172 3' -51.2 NC_006273.1 + 49523 0.66 0.997256
Target:  5'- uCCAguagUCGUCAUaCugCACCAUGG-GCCg -3'
miRNA:   3'- uGGU----GGUAGUA-GugGUGGUAUUgCGG- -5'
30172 3' -51.2 NC_006273.1 + 158769 0.66 0.996772
Target:  5'- gGCCGCCGgc--CGCgGCCAcgGACGCg -3'
miRNA:   3'- -UGGUGGUaguaGUGgUGGUa-UUGCGg -5'
30172 3' -51.2 NC_006273.1 + 95029 0.66 0.996772
Target:  5'- gGCCGCCAgUCGUgACCgggggucccucgGCC-UAGcCGCCg -3'
miRNA:   3'- -UGGUGGU-AGUAgUGG------------UGGuAUU-GCGG- -5'
30172 3' -51.2 NC_006273.1 + 213545 0.66 0.997256
Target:  5'- aGCCAaaGUCc-CAgCGCCGUAGCGCa -3'
miRNA:   3'- -UGGUggUAGuaGUgGUGGUAUUGCGg -5'
30172 3' -51.2 NC_006273.1 + 25032 0.66 0.996772
Target:  5'- cGCUAUCgcaagguccgGUCGUCAUgACCAgcAACGCCc -3'
miRNA:   3'- -UGGUGG----------UAGUAGUGgUGGUa-UUGCGG- -5'
30172 3' -51.2 NC_006273.1 + 189887 0.66 0.997678
Target:  5'- gACCGCCGggCAUCGCCGUCGgcuGCGaCg -3'
miRNA:   3'- -UGGUGGUa-GUAGUGGUGGUau-UGCgG- -5'
30172 3' -51.2 NC_006273.1 + 102954 0.66 0.998634
Target:  5'- cGCgCACCGUacCGUCGuCCAUUAacAACGCCg -3'
miRNA:   3'- -UG-GUGGUA--GUAGU-GGUGGUa-UUGCGG- -5'
30172 3' -51.2 NC_006273.1 + 59070 0.66 0.997256
Target:  5'- aGCCGCCGggagaCAg-GCCGCCcaaacagcgaGUAGCGCUg -3'
miRNA:   3'- -UGGUGGUa----GUagUGGUGG----------UAUUGCGG- -5'
30172 3' -51.2 NC_006273.1 + 111885 0.66 0.997678
Target:  5'- cGCCACCcaCA--GCCugCAguACGCCg -3'
miRNA:   3'- -UGGUGGuaGUagUGGugGUauUGCGG- -5'
30172 3' -51.2 NC_006273.1 + 225929 0.66 0.997256
Target:  5'- gGCUGCCGU----ACCACC-UGACGCUg -3'
miRNA:   3'- -UGGUGGUAguagUGGUGGuAUUGCGG- -5'
30172 3' -51.2 NC_006273.1 + 141910 0.66 0.99672
Target:  5'- gACCACCcugaguuccGUCAgcacaACCACCGUGcuuggacACGCg -3'
miRNA:   3'- -UGGUGG---------UAGUag---UGGUGGUAU-------UGCGg -5'
30172 3' -51.2 NC_006273.1 + 71668 0.66 0.997256
Target:  5'- aACCGCCG-CG-CGCCugCugcacaAUGugGCCg -3'
miRNA:   3'- -UGGUGGUaGUaGUGGugG------UAUugCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.