miRNA display CGI


Results 1 - 20 of 538 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30172 3' -51.2 NC_006273.1 + 162892 1.13 0.007195
Target:  5'- cACCACCAUCAUCACCACCAUAACGCCg -3'
miRNA:   3'- -UGGUGGUAGUAGUGGUGGUAUUGCGG- -5'
30172 3' -51.2 NC_006273.1 + 73008 0.85 0.317231
Target:  5'- cGCCGCCGcCAcCGCCACCAcUAGCGCCg -3'
miRNA:   3'- -UGGUGGUaGUaGUGGUGGU-AUUGCGG- -5'
30172 3' -51.2 NC_006273.1 + 198124 0.85 0.322357
Target:  5'- gGCCACggcgucuuccuccuCGUCGUCGCCGCCGUcGCGCCu -3'
miRNA:   3'- -UGGUG--------------GUAGUAGUGGUGGUAuUGCGG- -5'
30172 3' -51.2 NC_006273.1 + 42270 0.85 0.339634
Target:  5'- cACCGCCGUCGUUACCGCCGgagacccGCGCUc -3'
miRNA:   3'- -UGGUGGUAGUAGUGGUGGUau-----UGCGG- -5'
30172 3' -51.2 NC_006273.1 + 202146 0.85 0.347353
Target:  5'- cCCGCCGUCGUCGCCGCCccGGgGCCc -3'
miRNA:   3'- uGGUGGUAGUAGUGGUGGuaUUgCGG- -5'
30172 3' -51.2 NC_006273.1 + 121654 0.84 0.387799
Target:  5'- cGCCGCCGcCGUCGCCACCuccGGCGCUg -3'
miRNA:   3'- -UGGUGGUaGUAGUGGUGGua-UUGCGG- -5'
30172 3' -51.2 NC_006273.1 + 161615 0.83 0.396251
Target:  5'- cCCACCAUgGUCGCCGCUGgcgGCGCCg -3'
miRNA:   3'- uGGUGGUAgUAGUGGUGGUau-UGCGG- -5'
30172 3' -51.2 NC_006273.1 + 161884 0.83 0.43122
Target:  5'- cAUCACCGUCAUCcgccgucuCCGCCGUGcACGCCg -3'
miRNA:   3'- -UGGUGGUAGUAGu-------GGUGGUAU-UGCGG- -5'
30172 3' -51.2 NC_006273.1 + 94712 0.83 0.440241
Target:  5'- cCCGCCGUCGUCGCCugCGgcguUGGCGCa -3'
miRNA:   3'- uGGUGGUAGUAGUGGugGU----AUUGCGg -5'
30172 3' -51.2 NC_006273.1 + 38341 0.82 0.4586
Target:  5'- cGCCACCGUCGUCGCCGCUgccgcuCGUCa -3'
miRNA:   3'- -UGGUGGUAGUAGUGGUGGuauu--GCGG- -5'
30172 3' -51.2 NC_006273.1 + 204601 0.82 0.46793
Target:  5'- uACCGCCGcugcugcuguuaUCGUCGCCACCGccgccGGCGCCg -3'
miRNA:   3'- -UGGUGGU------------AGUAGUGGUGGUa----UUGCGG- -5'
30172 3' -51.2 NC_006273.1 + 19963 0.82 0.486879
Target:  5'- gACCGCCGUCAUCA-CAgCAUcACGCCg -3'
miRNA:   3'- -UGGUGGUAGUAGUgGUgGUAuUGCGG- -5'
30172 3' -51.2 NC_006273.1 + 125691 0.81 0.525806
Target:  5'- uGCCACCGUCccCGCUACCGUuccCGCCg -3'
miRNA:   3'- -UGGUGGUAGuaGUGGUGGUAuu-GCGG- -5'
30172 3' -51.2 NC_006273.1 + 19687 0.81 0.535726
Target:  5'- aACCGCCggCGUUGCCGCCAUGuCGCUc -3'
miRNA:   3'- -UGGUGGuaGUAGUGGUGGUAUuGCGG- -5'
30172 3' -51.2 NC_006273.1 + 81784 0.8 0.565849
Target:  5'- gGCCACCcgCGaccgCACCGCCGgucACGCCg -3'
miRNA:   3'- -UGGUGGuaGUa---GUGGUGGUau-UGCGG- -5'
30172 3' -51.2 NC_006273.1 + 28078 0.8 0.575992
Target:  5'- cGCCGCCGUCAcCACCGCCGaucCGUCg -3'
miRNA:   3'- -UGGUGGUAGUaGUGGUGGUauuGCGG- -5'
30172 3' -51.2 NC_006273.1 + 38392 0.8 0.575992
Target:  5'- cGCCGCCGUcCGUCGCCGCCgcugcgGUGGCGgCa -3'
miRNA:   3'- -UGGUGGUA-GUAGUGGUGG------UAUUGCgG- -5'
30172 3' -51.2 NC_006273.1 + 197137 0.79 0.59537
Target:  5'- cACCGCCGUCGUUGCCGguccCCGUuuccuccGGCGCCg -3'
miRNA:   3'- -UGGUGGUAGUAGUGGU----GGUA-------UUGCGG- -5'
30172 3' -51.2 NC_006273.1 + 57862 0.79 0.596393
Target:  5'- gACCACguUCAaCGCCGCCGguugcUGGCGCCa -3'
miRNA:   3'- -UGGUGguAGUaGUGGUGGU-----AUUGCGG- -5'
30172 3' -51.2 NC_006273.1 + 78079 0.79 0.627173
Target:  5'- cAUCACCGUCcccaGUCACCACCGc--CGCCg -3'
miRNA:   3'- -UGGUGGUAG----UAGUGGUGGUauuGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.