miRNA display CGI


Results 21 - 40 of 538 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30172 3' -51.2 NC_006273.1 + 69467 0.66 0.998362
Target:  5'- cUCAagaaCGUCGUCACCACaCGUuauaaaGCCa -3'
miRNA:   3'- uGGUg---GUAGUAGUGGUG-GUAuug---CGG- -5'
30172 3' -51.2 NC_006273.1 + 196965 0.66 0.998362
Target:  5'- cCCACCucgcUCGUCgcuguugccGCCACCGcAGCGgCg -3'
miRNA:   3'- uGGUGGu---AGUAG---------UGGUGGUaUUGCgG- -5'
30172 3' -51.2 NC_006273.1 + 133562 0.66 0.998362
Target:  5'- aGCCGCUGUU-UCACCAaaaagugucacuCCA--ACGCCa -3'
miRNA:   3'- -UGGUGGUAGuAGUGGU------------GGUauUGCGG- -5'
30172 3' -51.2 NC_006273.1 + 94127 0.66 0.998362
Target:  5'- cAUCACCGUCAaagcCugCugCGUGGugaGCCg -3'
miRNA:   3'- -UGGUGGUAGUa---GugGugGUAUUg--CGG- -5'
30172 3' -51.2 NC_006273.1 + 174148 0.66 0.998362
Target:  5'- gACCuggGCCcgCAUCugCugCAc--CGCCg -3'
miRNA:   3'- -UGG---UGGuaGUAGugGugGUauuGCGG- -5'
30172 3' -51.2 NC_006273.1 + 174216 0.66 0.998362
Target:  5'- cAUCACC-UCGUUGCuCACCu--GCGUCa -3'
miRNA:   3'- -UGGUGGuAGUAGUG-GUGGuauUGCGG- -5'
30172 3' -51.2 NC_006273.1 + 132150 0.66 0.998362
Target:  5'- gACCAgcaCGUCuUCugCGCCGUGGCcuCCg -3'
miRNA:   3'- -UGGUg--GUAGuAGugGUGGUAUUGc-GG- -5'
30172 3' -51.2 NC_006273.1 + 203373 0.66 0.998362
Target:  5'- -gCACCAUCGcCAUCugUAUGGCGaUCa -3'
miRNA:   3'- ugGUGGUAGUaGUGGugGUAUUGC-GG- -5'
30172 3' -51.2 NC_006273.1 + 59388 0.66 0.998362
Target:  5'- cACUugCA-CAUgGCCGCCcaacUGGCGUCa -3'
miRNA:   3'- -UGGugGUaGUAgUGGUGGu---AUUGCGG- -5'
30172 3' -51.2 NC_006273.1 + 125457 0.66 0.998362
Target:  5'- cGCCACCcuugaguuUgGUCuCCAUCA--GCGCCa -3'
miRNA:   3'- -UGGUGGu-------AgUAGuGGUGGUauUGCGG- -5'
30172 3' -51.2 NC_006273.1 + 162212 0.66 0.998362
Target:  5'- -gCGCCG-CGUCuACCGCCuc--CGCCg -3'
miRNA:   3'- ugGUGGUaGUAG-UGGUGGuauuGCGG- -5'
30172 3' -51.2 NC_006273.1 + 84310 0.66 0.998362
Target:  5'- -gUugCGUUuguagACCACCAUGAUGCCc -3'
miRNA:   3'- ugGugGUAGuag--UGGUGGUAUUGCGG- -5'
30172 3' -51.2 NC_006273.1 + 23221 0.66 0.998362
Target:  5'- gACCGCCcggAUCcgggcUCGCCAaacaccccuCCGUaAGCGCCg -3'
miRNA:   3'- -UGGUGG---UAGu----AGUGGU---------GGUA-UUGCGG- -5'
30172 3' -51.2 NC_006273.1 + 42769 0.66 0.998362
Target:  5'- cGCCGCgaGUCGcauUCugCACCGccGACGUCu -3'
miRNA:   3'- -UGGUGg-UAGU---AGugGUGGUa-UUGCGG- -5'
30172 3' -51.2 NC_006273.1 + 151339 0.66 0.998362
Target:  5'- cCCGCCG-CuUCGCgGCuCAUuuGGCGCCg -3'
miRNA:   3'- uGGUGGUaGuAGUGgUG-GUA--UUGCGG- -5'
30172 3' -51.2 NC_006273.1 + 69122 0.66 0.998362
Target:  5'- uUCugUAUCcauacUUACCACCGUGACaccgGCCg -3'
miRNA:   3'- uGGugGUAGu----AGUGGUGGUAUUG----CGG- -5'
30172 3' -51.2 NC_006273.1 + 117961 0.66 0.998332
Target:  5'- uGCCACgGUag-CACCuggaggaGCCGUAGCGgCg -3'
miRNA:   3'- -UGGUGgUAguaGUGG-------UGGUAUUGCgG- -5'
30172 3' -51.2 NC_006273.1 + 91038 0.66 0.998079
Target:  5'- cACCACCAcgugcacagucgucUCGgacgccugacagccCACCGCCGcgcacAACGCCg -3'
miRNA:   3'- -UGGUGGU--------------AGUa-------------GUGGUGGUa----UUGCGG- -5'
30172 3' -51.2 NC_006273.1 + 151692 0.66 0.998045
Target:  5'- gGCCACaggcgGUUGUCcuccACCGCCAgcggacggaagGGCGCCg -3'
miRNA:   3'- -UGGUGg----UAGUAG----UGGUGGUa----------UUGCGG- -5'
30172 3' -51.2 NC_006273.1 + 56558 0.66 0.998045
Target:  5'- cGCCGCCuccUCcucCGCCGCCGc--CGCCc -3'
miRNA:   3'- -UGGUGGu--AGua-GUGGUGGUauuGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.