miRNA display CGI


Results 1 - 20 of 538 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30172 3' -51.2 NC_006273.1 + 557 0.67 0.993732
Target:  5'- cGCCGCCGgugCGggacagggcuaagCGCCuuUAUGGCGCCg -3'
miRNA:   3'- -UGGUGGUa--GUa------------GUGGugGUAUUGCGG- -5'
30172 3' -51.2 NC_006273.1 + 1367 0.71 0.951031
Target:  5'- gACCugCGUCAgcugUCGCCGCgg-GACGCg -3'
miRNA:   3'- -UGGugGUAGU----AGUGGUGguaUUGCGg -5'
30172 3' -51.2 NC_006273.1 + 1801 0.76 0.767514
Target:  5'- gGCCGCCAaccugUCGUCACCuuACUGUuggcGCGCCa -3'
miRNA:   3'- -UGGUGGU-----AGUAGUGG--UGGUAu---UGCGG- -5'
30172 3' -51.2 NC_006273.1 + 2017 0.66 0.996667
Target:  5'- uGCCACgCAUCcggAUCACCcCCAUcuccacaucuccACGCCc -3'
miRNA:   3'- -UGGUG-GUAG---UAGUGGuGGUAu-----------UGCGG- -5'
30172 3' -51.2 NC_006273.1 + 3747 0.67 0.99488
Target:  5'- -aCGCU-UUAUCACCGuuuuacCCAUGACGCUa -3'
miRNA:   3'- ugGUGGuAGUAGUGGU------GGUAUUGCGG- -5'
30172 3' -51.2 NC_006273.1 + 4872 0.74 0.869977
Target:  5'- cACCGCCGUUcUCcCCAuCCGUccgAGCGCCg -3'
miRNA:   3'- -UGGUGGUAGuAGuGGU-GGUA---UUGCGG- -5'
30172 3' -51.2 NC_006273.1 + 4925 0.74 0.87728
Target:  5'- cAUCGCCGUCGcaUCGCC-CCGaGGCGCUg -3'
miRNA:   3'- -UGGUGGUAGU--AGUGGuGGUaUUGCGG- -5'
30172 3' -51.2 NC_006273.1 + 5570 0.66 0.998634
Target:  5'- uCCACCGUCAUCccauguuucCCACCcgAugGaaaaCCg -3'
miRNA:   3'- uGGUGGUAGUAGu--------GGUGGuaUugC----GG- -5'
30172 3' -51.2 NC_006273.1 + 5834 0.76 0.767514
Target:  5'- aACCGCCGcaUCuGUCGCCGCCAauUGGCgGCCc -3'
miRNA:   3'- -UGGUGGU--AG-UAGUGGUGGU--AUUG-CGG- -5'
30172 3' -51.2 NC_006273.1 + 7535 0.68 0.992176
Target:  5'- aGCCAcCCAUCGUguacucucgCACCACCc--ACGaCCa -3'
miRNA:   3'- -UGGU-GGUAGUA---------GUGGUGGuauUGC-GG- -5'
30172 3' -51.2 NC_006273.1 + 8342 0.67 0.994079
Target:  5'- aGCCGCCGU----GCCGCCGguugGugGCUg -3'
miRNA:   3'- -UGGUGGUAguagUGGUGGUa---UugCGG- -5'
30172 3' -51.2 NC_006273.1 + 8934 0.67 0.994079
Target:  5'- aGCCACCAcCA-C-CCACUGUAGaGCCa -3'
miRNA:   3'- -UGGUGGUaGUaGuGGUGGUAUUgCGG- -5'
30172 3' -51.2 NC_006273.1 + 9365 0.72 0.921997
Target:  5'- uGCCGCCAcuuugCAUCAUUACa--GACGCCu -3'
miRNA:   3'- -UGGUGGUa----GUAGUGGUGguaUUGCGG- -5'
30172 3' -51.2 NC_006273.1 + 11847 0.67 0.995591
Target:  5'- uGCCGCUccacgCcgCGgCACCAU-GCGCCa -3'
miRNA:   3'- -UGGUGGua---GuaGUgGUGGUAuUGCGG- -5'
30172 3' -51.2 NC_006273.1 + 12003 0.67 0.994079
Target:  5'- aGCCuucCCGUUucagCGCCACCcggAUGGCGUCu -3'
miRNA:   3'- -UGGu--GGUAGua--GUGGUGG---UAUUGCGG- -5'
30172 3' -51.2 NC_006273.1 + 12861 0.7 0.962384
Target:  5'- gGCCGgCGUUuUCACUacGCCGUggacGACGCCg -3'
miRNA:   3'- -UGGUgGUAGuAGUGG--UGGUA----UUGCGG- -5'
30172 3' -51.2 NC_006273.1 + 13600 0.66 0.998634
Target:  5'- gGCCGCCGUgCuggaggGCCGCCcc-ACGCCc -3'
miRNA:   3'- -UGGUGGUA-Guag---UGGUGGuauUGCGG- -5'
30172 3' -51.2 NC_006273.1 + 14565 0.66 0.998634
Target:  5'- cGCCGCCAaacaggcggcgUCAaagcUCAUCuguugccgcgaGCCGcUGACGCCg -3'
miRNA:   3'- -UGGUGGU-----------AGU----AGUGG-----------UGGU-AUUGCGG- -5'
30172 3' -51.2 NC_006273.1 + 14642 0.66 0.996772
Target:  5'- uGCCcgaGCCA-CGUCGCgauCACCAUGAUGgCa -3'
miRNA:   3'- -UGG---UGGUaGUAGUG---GUGGUAUUGCgG- -5'
30172 3' -51.2 NC_006273.1 + 14812 0.71 0.946788
Target:  5'- uACCGCUAUCAacgucuugUCGCUACCGUGuagcuaguuaGCCa -3'
miRNA:   3'- -UGGUGGUAGU--------AGUGGUGGUAUug--------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.