miRNA display CGI


Results 1 - 20 of 538 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30172 3' -51.2 NC_006273.1 + 91752 0.76 0.786212
Target:  5'- gACgGCUuugCGUCACCGCCAacUAACGUCg -3'
miRNA:   3'- -UGgUGGua-GUAGUGGUGGU--AUUGCGG- -5'
30172 3' -51.2 NC_006273.1 + 200982 0.78 0.68861
Target:  5'- cGCCACCGcugacguucUCAUCGCCGCCc--ACGUCa -3'
miRNA:   3'- -UGGUGGU---------AGUAGUGGUGGuauUGCGG- -5'
30172 3' -51.2 NC_006273.1 + 233200 0.77 0.698735
Target:  5'- cAUCACCGUCggCGCCGCCGcuGCuGCCg -3'
miRNA:   3'- -UGGUGGUAGuaGUGGUGGUauUG-CGG- -5'
30172 3' -51.2 NC_006273.1 + 79762 0.77 0.73858
Target:  5'- aACCGCCG-CAgUACCACCG--GCGCCg -3'
miRNA:   3'- -UGGUGGUaGUaGUGGUGGUauUGCGG- -5'
30172 3' -51.2 NC_006273.1 + 153682 0.76 0.751236
Target:  5'- gACCACCAUCcgCGCCugCAgaucaacgaucugcuCGCCu -3'
miRNA:   3'- -UGGUGGUAGuaGUGGugGUauu------------GCGG- -5'
30172 3' -51.2 NC_006273.1 + 194297 0.76 0.757979
Target:  5'- uCC-CCGUCcUCACCACCGUcccCGCCg -3'
miRNA:   3'- uGGuGGUAGuAGUGGUGGUAuu-GCGG- -5'
30172 3' -51.2 NC_006273.1 + 1801 0.76 0.767514
Target:  5'- gGCCGCCAaccugUCGUCACCuuACUGUuggcGCGCCa -3'
miRNA:   3'- -UGGUGGU-----AGUAGUGG--UGGUAu---UGCGG- -5'
30172 3' -51.2 NC_006273.1 + 43376 0.76 0.786212
Target:  5'- -aCACCAUCAUCcacaacACCACgGUGAgCGCCc -3'
miRNA:   3'- ugGUGGUAGUAG------UGGUGgUAUU-GCGG- -5'
30172 3' -51.2 NC_006273.1 + 205804 0.76 0.786212
Target:  5'- uGCCACCAUCAUCAgCGuauacuGCGCCg -3'
miRNA:   3'- -UGGUGGUAGUAGUgGUgguau-UGCGG- -5'
30172 3' -51.2 NC_006273.1 + 56366 0.78 0.678437
Target:  5'- aACCGCCGUCGUCuCCGCCG--GCGUUu -3'
miRNA:   3'- -UGGUGGUAGUAGuGGUGGUauUGCGG- -5'
30172 3' -51.2 NC_006273.1 + 191746 0.78 0.668226
Target:  5'- aACCACCGUCGUCccgguuuaaaaACCAUCAUcGACgGCCg -3'
miRNA:   3'- -UGGUGGUAGUAG-----------UGGUGGUA-UUG-CGG- -5'
30172 3' -51.2 NC_006273.1 + 34101 0.78 0.657986
Target:  5'- uACCGCCGUCGUCGCgC-CCGU--CGCCg -3'
miRNA:   3'- -UGGUGGUAGUAGUG-GuGGUAuuGCGG- -5'
30172 3' -51.2 NC_006273.1 + 38341 0.82 0.4586
Target:  5'- cGCCACCGUCGUCGCCGCUgccgcuCGUCa -3'
miRNA:   3'- -UGGUGGUAGUAGUGGUGGuauu--GCGG- -5'
30172 3' -51.2 NC_006273.1 + 19963 0.82 0.486879
Target:  5'- gACCGCCGUCAUCA-CAgCAUcACGCCg -3'
miRNA:   3'- -UGGUGGUAGUAGUgGUgGUAuUGCGG- -5'
30172 3' -51.2 NC_006273.1 + 81784 0.8 0.565849
Target:  5'- gGCCACCcgCGaccgCACCGCCGgucACGCCg -3'
miRNA:   3'- -UGGUGGuaGUa---GUGGUGGUau-UGCGG- -5'
30172 3' -51.2 NC_006273.1 + 38392 0.8 0.575992
Target:  5'- cGCCGCCGUcCGUCGCCGCCgcugcgGUGGCGgCa -3'
miRNA:   3'- -UGGUGGUA-GUAGUGGUGG------UAUUGCgG- -5'
30172 3' -51.2 NC_006273.1 + 78079 0.79 0.627173
Target:  5'- cAUCACCGUCcccaGUCACCACCGc--CGCCg -3'
miRNA:   3'- -UGGUGGUAG----UAGUGGUGGUauuGCGG- -5'
30172 3' -51.2 NC_006273.1 + 163649 0.79 0.637451
Target:  5'- cGCCGCCAcCAcCACCGCCGggcGACGUCg -3'
miRNA:   3'- -UGGUGGUaGUaGUGGUGGUa--UUGCGG- -5'
30172 3' -51.2 NC_006273.1 + 73122 0.79 0.637451
Target:  5'- gACCGCCGaCGUCugCGCCGcaaacuGCGCCg -3'
miRNA:   3'- -UGGUGGUaGUAGugGUGGUau----UGCGG- -5'
30172 3' -51.2 NC_006273.1 + 233640 0.78 0.646698
Target:  5'- uGCCACCGUCGUgccggccCACCGCCG--GCGCa -3'
miRNA:   3'- -UGGUGGUAGUA-------GUGGUGGUauUGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.