miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30172 5' -63.4 NC_006273.1 + 20360 0.66 0.695047
Target:  5'- -cGGUCccaacaCCGGCGgaccgcgacCCGGCGGUGCGg- -3'
miRNA:   3'- caCCGGc-----GGCCGU---------GGCUGCCACGCaa -5'
30172 5' -63.4 NC_006273.1 + 78220 0.66 0.695047
Target:  5'- --cGCCGCCGGgAaaGACGG-GCGa- -3'
miRNA:   3'- cacCGGCGGCCgUggCUGCCaCGCaa -5'
30172 5' -63.4 NC_006273.1 + 115574 0.66 0.695047
Target:  5'- gGUGGUgcugcugcuguUGUgGGUGCgGACGGUGCGg- -3'
miRNA:   3'- -CACCG-----------GCGgCCGUGgCUGCCACGCaa -5'
30172 5' -63.4 NC_006273.1 + 83345 0.66 0.695047
Target:  5'- gGUGGgacCCGgCGGCGCCG-UGGUGgGa- -3'
miRNA:   3'- -CACC---GGCgGCCGUGGCuGCCACgCaa -5'
30172 5' -63.4 NC_006273.1 + 115149 0.66 0.695047
Target:  5'- uUGGUCGCCuGCACUGccaGGUGCu-- -3'
miRNA:   3'- cACCGGCGGcCGUGGCug-CCACGcaa -5'
30172 5' -63.4 NC_006273.1 + 96609 0.66 0.694107
Target:  5'- --aGCCGCCGGagaaGCCGACgagggaucgggcgGGUGCa-- -3'
miRNA:   3'- cacCGGCGGCCg---UGGCUG-------------CCACGcaa -5'
30172 5' -63.4 NC_006273.1 + 111198 0.66 0.685623
Target:  5'- -cGGCCacgaGCCagacgaGGCGgCGGCGGUGgCGUUg -3'
miRNA:   3'- caCCGG----CGG------CCGUgGCUGCCAC-GCAA- -5'
30172 5' -63.4 NC_006273.1 + 13832 0.66 0.685623
Target:  5'- -cGGaCGUCGGgACCGACGGacGCGa- -3'
miRNA:   3'- caCCgGCGGCCgUGGCUGCCa-CGCaa -5'
30172 5' -63.4 NC_006273.1 + 68068 0.66 0.685623
Target:  5'- cGUGGCCGCCGcUGCCGcCGcUGUGg- -3'
miRNA:   3'- -CACCGGCGGCcGUGGCuGCcACGCaa -5'
30172 5' -63.4 NC_006273.1 + 162529 0.66 0.685623
Target:  5'- cGUGGCCGUCcGCA-CGAUGGccuuucUGCGUUu -3'
miRNA:   3'- -CACCGGCGGcCGUgGCUGCC------ACGCAA- -5'
30172 5' -63.4 NC_006273.1 + 112321 0.66 0.684678
Target:  5'- aGUGGCguuuCGCCugcGGCugCGAcgcgaaaCGGUGCGa- -3'
miRNA:   3'- -CACCG----GCGG---CCGugGCU-------GCCACGCaa -5'
30172 5' -63.4 NC_006273.1 + 147552 0.66 0.676161
Target:  5'- -aGGCUGgCGGCGUCGGCGGgagcaGCGg- -3'
miRNA:   3'- caCCGGCgGCCGUGGCUGCCa----CGCaa -5'
30172 5' -63.4 NC_006273.1 + 166948 0.66 0.676161
Target:  5'- aUGaGCUGCUGGC-CCGcuaacACGGUGaCGUUg -3'
miRNA:   3'- cAC-CGGCGGCCGuGGC-----UGCCAC-GCAA- -5'
30172 5' -63.4 NC_006273.1 + 207203 0.66 0.666667
Target:  5'- gGUGG-CGCUGGUcuggaACaCGACGGUGcCGUa -3'
miRNA:   3'- -CACCgGCGGCCG-----UG-GCUGCCAC-GCAa -5'
30172 5' -63.4 NC_006273.1 + 124437 0.66 0.666667
Target:  5'- -cGGCCGCgCGGgcgugcgcggcuCGCCGACGcUGCGc- -3'
miRNA:   3'- caCCGGCG-GCC------------GUGGCUGCcACGCaa -5'
30172 5' -63.4 NC_006273.1 + 153589 0.66 0.657149
Target:  5'- cUGaGCgG-CGGCgugACCGGCGGUGCGg- -3'
miRNA:   3'- cAC-CGgCgGCCG---UGGCUGCCACGCaa -5'
30172 5' -63.4 NC_006273.1 + 69754 0.66 0.657149
Target:  5'- -gGGCCG-CGGCACCG-UGcUGCGUc -3'
miRNA:   3'- caCCGGCgGCCGUGGCuGCcACGCAa -5'
30172 5' -63.4 NC_006273.1 + 32654 0.66 0.656196
Target:  5'- cUGGCCGUCGGCGucgcgucgcaggcCCGAgCGGUuGcCGUg -3'
miRNA:   3'- cACCGGCGGCCGU-------------GGCU-GCCA-C-GCAa -5'
30172 5' -63.4 NC_006273.1 + 198870 0.66 0.647613
Target:  5'- -cGGuCCGCCGGUcUCGACGGaccGCGc- -3'
miRNA:   3'- caCC-GGCGGCCGuGGCUGCCa--CGCaa -5'
30172 5' -63.4 NC_006273.1 + 233293 0.66 0.647613
Target:  5'- cUGGCCgaGCCGuaGCaUGugGGUGCGa- -3'
miRNA:   3'- cACCGG--CGGCcgUG-GCugCCACGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.