miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30172 5' -63.4 NC_006273.1 + 162927 1.05 0.001755
Target:  5'- cGUGGCCGCCGGCACCGACGGUGCGUUa -3'
miRNA:   3'- -CACCGGCGGCCGUGGCUGCCACGCAA- -5'
30172 5' -63.4 NC_006273.1 + 149742 0.75 0.221307
Target:  5'- -cGGCUGCCGGCGCUGuuACGGgagcGCGUg -3'
miRNA:   3'- caCCGGCGGCCGUGGC--UGCCa---CGCAa -5'
30172 5' -63.4 NC_006273.1 + 189900 0.75 0.226413
Target:  5'- --cGCCGUCGGCugCGACGGUG-GUUg -3'
miRNA:   3'- cacCGGCGGCCGugGCUGCCACgCAA- -5'
30172 5' -63.4 NC_006273.1 + 159898 0.74 0.247842
Target:  5'- -aGGCgGCCGaaGCGCCGGCGGguccUGCGUUg -3'
miRNA:   3'- caCCGgCGGC--CGUGGCUGCC----ACGCAA- -5'
30172 5' -63.4 NC_006273.1 + 20622 0.73 0.302165
Target:  5'- cUGGCgaucauacCGCCGGCACCcACGGUGCu-- -3'
miRNA:   3'- cACCG--------GCGGCCGUGGcUGCCACGcaa -5'
30172 5' -63.4 NC_006273.1 + 204631 0.72 0.322206
Target:  5'- --cGCCGCCGGCGCCGuucuCGGgcaGCGa- -3'
miRNA:   3'- cacCGGCGGCCGUGGCu---GCCa--CGCaa -5'
30172 5' -63.4 NC_006273.1 + 202557 0.72 0.343225
Target:  5'- cGUGGCCgGCgUGGCgGCCGACGGcaGCGUg -3'
miRNA:   3'- -CACCGG-CG-GCCG-UGGCUGCCa-CGCAa -5'
30172 5' -63.4 NC_006273.1 + 158768 0.71 0.380403
Target:  5'- -aGGCCGCCGGCcgcgGCC-ACGGacGCGUa -3'
miRNA:   3'- caCCGGCGGCCG----UGGcUGCCa-CGCAa -5'
30172 5' -63.4 NC_006273.1 + 105109 0.71 0.388155
Target:  5'- -aGGCCgGCgCGGCugCGACGGUuGCa-- -3'
miRNA:   3'- caCCGG-CG-GCCGugGCUGCCA-CGcaa -5'
30172 5' -63.4 NC_006273.1 + 22252 0.71 0.407177
Target:  5'- -cGGgCGCCGGCgagcgacgcggcuccGCCGuCGGUGCGc- -3'
miRNA:   3'- caCCgGCGGCCG---------------UGGCuGCCACGCaa -5'
30172 5' -63.4 NC_006273.1 + 201962 0.7 0.420179
Target:  5'- -gGGCUGUCGcGCGCCGccgacgcccgagGCGGUGCGc- -3'
miRNA:   3'- caCCGGCGGC-CGUGGC------------UGCCACGCaa -5'
30172 5' -63.4 NC_006273.1 + 196917 0.7 0.428431
Target:  5'- -aGGCCGCCGGCGggGACGcgccGUGCGc- -3'
miRNA:   3'- caCCGGCGGCCGUggCUGC----CACGCaa -5'
30172 5' -63.4 NC_006273.1 + 2024 0.7 0.428431
Target:  5'- -aGGCCGCCGGCGggGACGcgccGUGCGc- -3'
miRNA:   3'- caCCGGCGGCCGUggCUGC----CACGCaa -5'
30172 5' -63.4 NC_006273.1 + 123091 0.7 0.436778
Target:  5'- -gGGUCgGCUGGCGCCu-CGGUGCGg- -3'
miRNA:   3'- caCCGG-CGGCCGUGGcuGCCACGCaa -5'
30172 5' -63.4 NC_006273.1 + 190556 0.7 0.436778
Target:  5'- uUGGCCGUCGGCGuCCGcaguCGG-GCGa- -3'
miRNA:   3'- cACCGGCGGCCGU-GGCu---GCCaCGCaa -5'
30172 5' -63.4 NC_006273.1 + 112572 0.7 0.442677
Target:  5'- -cGGCCGCCGGUgcuucuucuaccugGCUGGCGcaGUGCGc- -3'
miRNA:   3'- caCCGGCGGCCG--------------UGGCUGC--CACGCaa -5'
30172 5' -63.4 NC_006273.1 + 60521 0.7 0.442677
Target:  5'- -cGGCUuggaauccuaccugGCCGGCACCGAU-GUGCGg- -3'
miRNA:   3'- caCCGG--------------CGGCCGUGGCUGcCACGCaa -5'
30172 5' -63.4 NC_006273.1 + 141747 0.7 0.45375
Target:  5'- -gGGCgCGCCGGCGCCaGugGaUGCGc- -3'
miRNA:   3'- caCCG-GCGGCCGUGG-CugCcACGCaa -5'
30172 5' -63.4 NC_006273.1 + 204706 0.7 0.45375
Target:  5'- --aGCCGCCGGCACCG-CGGccgGCc-- -3'
miRNA:   3'- cacCGGCGGCCGUGGCuGCCa--CGcaa -5'
30172 5' -63.4 NC_006273.1 + 34245 0.69 0.479859
Target:  5'- -gGGCCGCCGGCaggcagcgGCCGAUGaGUucGCGc- -3'
miRNA:   3'- caCCGGCGGCCG--------UGGCUGC-CA--CGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.