miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30172 5' -63.4 NC_006273.1 + 184398 0.66 0.645705
Target:  5'- aGUGGCCcagggagacaucCCGGUgucuaugucgGCCGGCGGUGCu-- -3'
miRNA:   3'- -CACCGGc-----------GGCCG----------UGGCUGCCACGcaa -5'
30172 5' -63.4 NC_006273.1 + 144407 0.67 0.638067
Target:  5'- -cGGCUGucugcCCGGCGCCG-CGGcgGCGg- -3'
miRNA:   3'- caCCGGC-----GGCCGUGGCuGCCa-CGCaa -5'
30172 5' -63.4 NC_006273.1 + 221813 0.67 0.638067
Target:  5'- -gGGCCGcCCGGCGggugagcacCCGGCGuUGCGc- -3'
miRNA:   3'- caCCGGC-GGCCGU---------GGCUGCcACGCaa -5'
30172 5' -63.4 NC_006273.1 + 39160 0.67 0.628517
Target:  5'- -gGGaaaGCCgGGCugCGGCGGUGCu-- -3'
miRNA:   3'- caCCgg-CGG-CCGugGCUGCCACGcaa -5'
30172 5' -63.4 NC_006273.1 + 150768 0.67 0.628517
Target:  5'- --aGCCGCCgGGCGCUG-UGGUGCa-- -3'
miRNA:   3'- cacCGGCGG-CCGUGGCuGCCACGcaa -5'
30172 5' -63.4 NC_006273.1 + 88584 0.67 0.628517
Target:  5'- aGUGGCgGCCaugGGCGCCGGCacgccUGCGg- -3'
miRNA:   3'- -CACCGgCGG---CCGUGGCUGcc---ACGCaa -5'
30172 5' -63.4 NC_006273.1 + 131715 0.67 0.628517
Target:  5'- -gGGCCGCCGGCuuuccACCGA--GUGCu-- -3'
miRNA:   3'- caCCGGCGGCCG-----UGGCUgcCACGcaa -5'
30172 5' -63.4 NC_006273.1 + 117828 0.67 0.618969
Target:  5'- -gGGCCGCuaCGGCGCCGggauacaugACGG-GCGc- -3'
miRNA:   3'- caCCGGCG--GCCGUGGC---------UGCCaCGCaa -5'
30172 5' -63.4 NC_006273.1 + 45312 0.67 0.618969
Target:  5'- -cGGUU-UCGGCGCCGACGGUGUu-- -3'
miRNA:   3'- caCCGGcGGCCGUGGCUGCCACGcaa -5'
30172 5' -63.4 NC_006273.1 + 140407 0.67 0.618969
Target:  5'- cGUGGaaGCCGuGCugCGACaGGUGUa-- -3'
miRNA:   3'- -CACCggCGGC-CGugGCUG-CCACGcaa -5'
30172 5' -63.4 NC_006273.1 + 190490 0.67 0.618969
Target:  5'- uGUGGCgCGCaggGGCuCCGACGuG-GCGUUa -3'
miRNA:   3'- -CACCG-GCGg--CCGuGGCUGC-CaCGCAA- -5'
30172 5' -63.4 NC_006273.1 + 30686 0.67 0.60943
Target:  5'- -cGGCCG-CGGUGCCGGCGGcuaugauccUGUGg- -3'
miRNA:   3'- caCCGGCgGCCGUGGCUGCC---------ACGCaa -5'
30172 5' -63.4 NC_006273.1 + 55095 0.67 0.60943
Target:  5'- uGUGGUgGagaCGGUACCGACGGcguccGCGg- -3'
miRNA:   3'- -CACCGgCg--GCCGUGGCUGCCa----CGCaa -5'
30172 5' -63.4 NC_006273.1 + 177165 0.67 0.597052
Target:  5'- uGUGGgcuUCGCgCGGCACCGuguucgaggaggagACGGUGUGg- -3'
miRNA:   3'- -CACC---GGCG-GCCGUGGC--------------UGCCACGCaa -5'
30172 5' -63.4 NC_006273.1 + 1165 0.67 0.590402
Target:  5'- gGUGGagCGCCaGGCGCUGACGGaGCu-- -3'
miRNA:   3'- -CACCg-GCGG-CCGUGGCUGCCaCGcaa -5'
30172 5' -63.4 NC_006273.1 + 42210 0.67 0.590402
Target:  5'- -cGGCCGCCgaacgGGCAgCGugGGcuucgGCGg- -3'
miRNA:   3'- caCCGGCGG-----CCGUgGCugCCa----CGCaa -5'
30172 5' -63.4 NC_006273.1 + 196058 0.67 0.590402
Target:  5'- gGUGGagCGCCaGGCGCUGACGGaGCu-- -3'
miRNA:   3'- -CACCg-GCGG-CCGUGGCUGCCaCGcaa -5'
30172 5' -63.4 NC_006273.1 + 196986 0.67 0.580924
Target:  5'- --aGCCGUacggaGGCGCCGGCGGgagcgcgauuUGCGUg -3'
miRNA:   3'- cacCGGCGg----CCGUGGCUGCC----------ACGCAa -5'
30172 5' -63.4 NC_006273.1 + 54541 0.67 0.580924
Target:  5'- cGUaGCCGgCGGUGCUguuGGCGGUGCGg- -3'
miRNA:   3'- -CAcCGGCgGCCGUGG---CUGCCACGCaa -5'
30172 5' -63.4 NC_006273.1 + 2093 0.67 0.580924
Target:  5'- --aGCCGUacggaGGCGCCGGCGGgagcgcgauuUGCGUg -3'
miRNA:   3'- cacCGGCGg----CCGUGGCUGCC----------ACGCAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.