miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30172 5' -63.4 NC_006273.1 + 969 0.69 0.488724
Target:  5'- cUGGgCGCCGGCGCCGguaACGGga-GUUa -3'
miRNA:   3'- cACCgGCGGCCGUGGC---UGCCacgCAA- -5'
30172 5' -63.4 NC_006273.1 + 1165 0.67 0.590402
Target:  5'- gGUGGagCGCCaGGCGCUGACGGaGCu-- -3'
miRNA:   3'- -CACCg-GCGG-CCGUGGCUGCCaCGcaa -5'
30172 5' -63.4 NC_006273.1 + 1918 0.68 0.534122
Target:  5'- -cGGCUgGCUGGCGCUGggcGCGGUGCu-- -3'
miRNA:   3'- caCCGG-CGGCCGUGGC---UGCCACGcaa -5'
30172 5' -63.4 NC_006273.1 + 2024 0.7 0.428431
Target:  5'- -aGGCCGCCGGCGggGACGcgccGUGCGc- -3'
miRNA:   3'- caCCGGCGGCCGUggCUGC----CACGCaa -5'
30172 5' -63.4 NC_006273.1 + 2093 0.67 0.580924
Target:  5'- --aGCCGUacggaGGCGCCGGCGGgagcgcgauuUGCGUg -3'
miRNA:   3'- cacCGGCGg----CCGUGGCUGCC----------ACGCAa -5'
30172 5' -63.4 NC_006273.1 + 2183 0.69 0.488724
Target:  5'- -cGGCagcaGCggCGGCGCCGACGGUGaugGUg -3'
miRNA:   3'- caCCGg---CG--GCCGUGGCUGCCACg--CAa -5'
30172 5' -63.4 NC_006273.1 + 13832 0.66 0.685623
Target:  5'- -cGGaCGUCGGgACCGACGGacGCGa- -3'
miRNA:   3'- caCCgGCGGCCgUGGCUGCCa-CGCaa -5'
30172 5' -63.4 NC_006273.1 + 17409 0.68 0.543388
Target:  5'- aUGGCCGCCGGCcACgagagcgaugaCGACGaGUGgGa- -3'
miRNA:   3'- cACCGGCGGCCG-UG-----------GCUGC-CACgCaa -5'
30172 5' -63.4 NC_006273.1 + 20360 0.66 0.695047
Target:  5'- -cGGUCccaacaCCGGCGgaccgcgacCCGGCGGUGCGg- -3'
miRNA:   3'- caCCGGc-----GGCCGU---------GGCUGCCACGCaa -5'
30172 5' -63.4 NC_006273.1 + 20622 0.73 0.302165
Target:  5'- cUGGCgaucauacCGCCGGCACCcACGGUGCu-- -3'
miRNA:   3'- cACCG--------GCGGCCGUGGcUGCCACGcaa -5'
30172 5' -63.4 NC_006273.1 + 22252 0.71 0.407177
Target:  5'- -cGGgCGCCGGCgagcgacgcggcuccGCCGuCGGUGCGc- -3'
miRNA:   3'- caCCgGCGGCCG---------------UGGCuGCCACGCaa -5'
30172 5' -63.4 NC_006273.1 + 30686 0.67 0.60943
Target:  5'- -cGGCCG-CGGUGCCGGCGGcuaugauccUGUGg- -3'
miRNA:   3'- caCCGGCgGCCGUGGCUGCC---------ACGCaa -5'
30172 5' -63.4 NC_006273.1 + 32654 0.66 0.656196
Target:  5'- cUGGCCGUCGGCGucgcgucgcaggcCCGAgCGGUuGcCGUg -3'
miRNA:   3'- cACCGGCGGCCGU-------------GGCU-GCCA-C-GCAa -5'
30172 5' -63.4 NC_006273.1 + 34245 0.69 0.479859
Target:  5'- -gGGCCGCCGGCaggcagcgGCCGAUGaGUucGCGc- -3'
miRNA:   3'- caCCGGCGGCCG--------UGGCUGC-CA--CGCaa -5'
30172 5' -63.4 NC_006273.1 + 38633 0.69 0.506681
Target:  5'- -cGGCCGUCaGCAgCGACgcggGGUGCGg- -3'
miRNA:   3'- caCCGGCGGcCGUgGCUG----CCACGCaa -5'
30172 5' -63.4 NC_006273.1 + 39160 0.67 0.628517
Target:  5'- -gGGaaaGCCgGGCugCGGCGGUGCu-- -3'
miRNA:   3'- caCCgg-CGG-CCGugGCUGCCACGcaa -5'
30172 5' -63.4 NC_006273.1 + 42210 0.67 0.590402
Target:  5'- -cGGCCGCCgaacgGGCAgCGugGGcuucgGCGg- -3'
miRNA:   3'- caCCGGCGG-----CCGUgGCugCCa----CGCaa -5'
30172 5' -63.4 NC_006273.1 + 44795 0.68 0.543388
Target:  5'- -cGGCCGaUgGGCGCCGGCGGacGUGa- -3'
miRNA:   3'- caCCGGC-GgCCGUGGCUGCCa-CGCaa -5'
30172 5' -63.4 NC_006273.1 + 45312 0.67 0.618969
Target:  5'- -cGGUU-UCGGCGCCGACGGUGUu-- -3'
miRNA:   3'- caCCGGcGGCCGUGGCUGCCACGcaa -5'
30172 5' -63.4 NC_006273.1 + 54541 0.67 0.580924
Target:  5'- cGUaGCCGgCGGUGCUguuGGCGGUGCGg- -3'
miRNA:   3'- -CAcCGGCgGCCGUGG---CUGCCACGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.