miRNA display CGI


Results 1 - 20 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30173 3' -58.4 NC_006273.1 + 130558 0.66 0.89865
Target:  5'- -gGCCacGCUGaCAGaagUGGGGGAGGGGGAa -3'
miRNA:   3'- cgUGG--UGGC-GUCa--GCCUCCUCCUCUU- -5'
30173 3' -58.4 NC_006273.1 + 73771 0.66 0.894883
Target:  5'- gGCGCCGCCaGCggcgaccauGGUgGGAGagcaacucggaugacGAGGAGGAg -3'
miRNA:   3'- -CGUGGUGG-CG---------UCAgCCUC---------------CUCCUCUU- -5'
30173 3' -58.4 NC_006273.1 + 66043 0.66 0.89233
Target:  5'- gGCGCuCAUCGCc-UgGGuGGAGGAGAu -3'
miRNA:   3'- -CGUG-GUGGCGucAgCCuCCUCCUCUu -5'
30173 3' -58.4 NC_006273.1 + 34041 0.66 0.89233
Target:  5'- aCGCCACCGCGGagGGcgacaaaGAGGAGu- -3'
miRNA:   3'- cGUGGUGGCGUCagCCuc-----CUCCUCuu -5'
30173 3' -58.4 NC_006273.1 + 207919 0.66 0.89233
Target:  5'- aGCACCagguguagaaaACCGUGGUaaCGGA-GAGGAGGc -3'
miRNA:   3'- -CGUGG-----------UGGCGUCA--GCCUcCUCCUCUu -5'
30173 3' -58.4 NC_006273.1 + 36857 0.66 0.89233
Target:  5'- cGCGCUACguagccgguCGCGGaccgCGGAGucGGGGAGAAg -3'
miRNA:   3'- -CGUGGUG---------GCGUCa---GCCUC--CUCCUCUU- -5'
30173 3' -58.4 NC_006273.1 + 210904 0.66 0.89233
Target:  5'- cCACCGCCGUGGagauUUGGAaGAGGAGc- -3'
miRNA:   3'- cGUGGUGGCGUC----AGCCUcCUCCUCuu -5'
30173 3' -58.4 NC_006273.1 + 45319 0.66 0.888436
Target:  5'- gGCGCCGacgguguucguccccCCGCcGUCGGAGGAGu---- -3'
miRNA:   3'- -CGUGGU---------------GGCGuCAGCCUCCUCcucuu -5'
30173 3' -58.4 NC_006273.1 + 72896 0.66 0.885798
Target:  5'- uCACCGUCGUucUCGGAGGAGG-GAGg -3'
miRNA:   3'- cGUGGUGGCGucAGCCUCCUCCuCUU- -5'
30173 3' -58.4 NC_006273.1 + 132369 0.66 0.885798
Target:  5'- cGCuGCCGCCGCGGcguuUCGuccGGAGGAGc- -3'
miRNA:   3'- -CG-UGGUGGCGUC----AGCcu-CCUCCUCuu -5'
30173 3' -58.4 NC_006273.1 + 84841 0.66 0.885133
Target:  5'- gGCACCcgagacgGCCGCGG-CGGccgucaGGGuGGAGGg -3'
miRNA:   3'- -CGUGG-------UGGCGUCaGCC------UCCuCCUCUu -5'
30173 3' -58.4 NC_006273.1 + 193055 0.66 0.879058
Target:  5'- aGCAgCGagcuaCGCAGaCGGAauaucuGGAGGAGAGu -3'
miRNA:   3'- -CGUgGUg----GCGUCaGCCU------CCUCCUCUU- -5'
30173 3' -58.4 NC_006273.1 + 84909 0.66 0.872115
Target:  5'- aGCuGCCACCGCGcUgGGAacGGGGAGAGg -3'
miRNA:   3'- -CG-UGGUGGCGUcAgCCUc-CUCCUCUU- -5'
30173 3' -58.4 NC_006273.1 + 157985 0.66 0.872115
Target:  5'- cCACCAUgGC-GUCGGAGGcGGuGGg -3'
miRNA:   3'- cGUGGUGgCGuCAGCCUCCuCCuCUu -5'
30173 3' -58.4 NC_006273.1 + 40374 0.66 0.871409
Target:  5'- cGCGCuCGCCccCGGUuucaggaUGGAGGGGGAGGc -3'
miRNA:   3'- -CGUG-GUGGc-GUCA-------GCCUCCUCCUCUu -5'
30173 3' -58.4 NC_006273.1 + 43404 0.67 0.857635
Target:  5'- cGCcCCACC-UAGagGGAGGGGGGGu- -3'
miRNA:   3'- -CGuGGUGGcGUCagCCUCCUCCUCuu -5'
30173 3' -58.4 NC_006273.1 + 140182 0.67 0.857635
Target:  5'- gGCGCCgACCccggcuggGCGGccgaUgGGGGGAGGGGAGu -3'
miRNA:   3'- -CGUGG-UGG--------CGUC----AgCCUCCUCCUCUU- -5'
30173 3' -58.4 NC_006273.1 + 154583 0.67 0.850109
Target:  5'- cCACCAacaaccccuCCGUccAGgcucaCGGAGGGGGAGGAu -3'
miRNA:   3'- cGUGGU---------GGCG--UCa----GCCUCCUCCUCUU- -5'
30173 3' -58.4 NC_006273.1 + 227327 0.67 0.850109
Target:  5'- uCACCACCacaacCAGUCGGccGuGGAGAGg -3'
miRNA:   3'- cGUGGUGGc----GUCAGCCucCuCCUCUU- -5'
30173 3' -58.4 NC_006273.1 + 200456 0.67 0.845505
Target:  5'- cCGCCACCuccaccgcuaacccaGCAGcCGGAGGAGcAGGc -3'
miRNA:   3'- cGUGGUGG---------------CGUCaGCCUCCUCcUCUu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.