miRNA display CGI


Results 1 - 20 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30173 3' -58.4 NC_006273.1 + 163152 1.07 0.003409
Target:  5'- gGCACCACCGCAGUCGGAGGAGGAGAAu -3'
miRNA:   3'- -CGUGGUGGCGUCAGCCUCCUCCUCUU- -5'
30173 3' -58.4 NC_006273.1 + 190364 0.78 0.264456
Target:  5'- cCGCCGCCGUGGgggccgCGGAgGGAGGAGAGg -3'
miRNA:   3'- cGUGGUGGCGUCa-----GCCU-CCUCCUCUU- -5'
30173 3' -58.4 NC_006273.1 + 7712 0.75 0.39189
Target:  5'- -gGCCGCgGCAG-CGG-GGAGGAGAGg -3'
miRNA:   3'- cgUGGUGgCGUCaGCCuCCUCCUCUU- -5'
30173 3' -58.4 NC_006273.1 + 169880 0.74 0.458251
Target:  5'- -gGCCGCCGCuaucgcugaGGGGGAGGAGGAg -3'
miRNA:   3'- cgUGGUGGCGucag-----CCUCCUCCUCUU- -5'
30173 3' -58.4 NC_006273.1 + 178824 0.74 0.460032
Target:  5'- cGgGCgGCgGCGG-CGGAGGAGGAGGc -3'
miRNA:   3'- -CgUGgUGgCGUCaGCCUCCUCCUCUu -5'
30173 3' -58.4 NC_006273.1 + 69444 0.72 0.543521
Target:  5'- gGCGCCGCUGUAG-CGGcGGAGGAc-- -3'
miRNA:   3'- -CGUGGUGGCGUCaGCCuCCUCCUcuu -5'
30173 3' -58.4 NC_006273.1 + 4622 0.72 0.553135
Target:  5'- gGUACUGCUgaugGUAGUCGGGacGGAGGAGAGa -3'
miRNA:   3'- -CGUGGUGG----CGUCAGCCU--CCUCCUCUU- -5'
30173 3' -58.4 NC_006273.1 + 130967 0.72 0.553135
Target:  5'- aCACCgucaACgGCGGUCGGAgacgggagaagaGGAGGAGGAa -3'
miRNA:   3'- cGUGG----UGgCGUCAGCCU------------CCUCCUCUU- -5'
30173 3' -58.4 NC_006273.1 + 177176 0.71 0.621519
Target:  5'- cGCGgCACCGU-GUUcGAGGAGGAGAc -3'
miRNA:   3'- -CGUgGUGGCGuCAGcCUCCUCCUCUu -5'
30173 3' -58.4 NC_006273.1 + 233681 0.7 0.660897
Target:  5'- cCACCGCCGCGG-CGGAuuuccgcgcGGGGGAcGGGg -3'
miRNA:   3'- cGUGGUGGCGUCaGCCU---------CCUCCU-CUU- -5'
30173 3' -58.4 NC_006273.1 + 36529 0.7 0.670707
Target:  5'- -gACCggcggACCGCGGagCGGAGGAGGuGAc -3'
miRNA:   3'- cgUGG-----UGGCGUCa-GCCUCCUCCuCUu -5'
30173 3' -58.4 NC_006273.1 + 98811 0.7 0.687312
Target:  5'- cCGCCGCCGUucgCGGAGGAGGuuccugcuccguucGGAAu -3'
miRNA:   3'- cGUGGUGGCGucaGCCUCCUCC--------------UCUU- -5'
30173 3' -58.4 NC_006273.1 + 84779 0.7 0.709576
Target:  5'- -aACgC-CCGCGGUC-GAGGAGGAGGGg -3'
miRNA:   3'- cgUG-GuGGCGUCAGcCUCCUCCUCUU- -5'
30173 3' -58.4 NC_006273.1 + 56106 0.69 0.719161
Target:  5'- cGCugCGUCGCAGUCaGAcccacuaccuGGAGGAGAu -3'
miRNA:   3'- -CGugGUGGCGUCAGcCU----------CCUCCUCUu -5'
30173 3' -58.4 NC_006273.1 + 105141 0.69 0.719161
Target:  5'- aCGCCACCgGCGGUCGuucAGGGGGAa-- -3'
miRNA:   3'- cGUGGUGG-CGUCAGCc--UCCUCCUcuu -5'
30173 3' -58.4 NC_006273.1 + 167679 0.69 0.722975
Target:  5'- -gGCCGCCGUucgucGUCacggggcggcgcgagGGAGGAGGAGGu -3'
miRNA:   3'- cgUGGUGGCGu----CAG---------------CCUCCUCCUCUu -5'
30173 3' -58.4 NC_006273.1 + 135391 0.69 0.738115
Target:  5'- aCGCCACUGcCGG-CGGAcaacagcggGGAGGAGAc -3'
miRNA:   3'- cGUGGUGGC-GUCaGCCU---------CCUCCUCUu -5'
30173 3' -58.4 NC_006273.1 + 11 0.69 0.747468
Target:  5'- cGCACCgGCgGCGGUCGGGGuGugucGGGGGc -3'
miRNA:   3'- -CGUGG-UGgCGUCAGCCUC-Cu---CCUCUu -5'
30173 3' -58.4 NC_006273.1 + 155015 0.69 0.747468
Target:  5'- -gGCCGCCGCucccgcUUGGAgcGGGGGAGAGa -3'
miRNA:   3'- cgUGGUGGCGuc----AGCCU--CCUCCUCUU- -5'
30173 3' -58.4 NC_006273.1 + 194904 0.69 0.747468
Target:  5'- cGCACCgGCgGCGGUCGGGGuGugucGGGGGc -3'
miRNA:   3'- -CGUGG-UGgCGUCAGCCUC-Cu---CCUCUu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.