miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30173 3' -58.4 NC_006273.1 + 85725 0.67 0.8424
Target:  5'- cCACCuaacGCCGCGGgCGGcguGGAgGGAGAAa -3'
miRNA:   3'- cGUGG----UGGCGUCaGCCu--CCU-CCUCUU- -5'
30173 3' -58.4 NC_006273.1 + 932 0.67 0.834514
Target:  5'- uCGCgGCCGCGGggcCGGAGGGccuucGGGGGu -3'
miRNA:   3'- cGUGgUGGCGUCa--GCCUCCU-----CCUCUu -5'
30173 3' -58.4 NC_006273.1 + 195824 0.67 0.834514
Target:  5'- uCGCgGCCGCGGggcCGGAGGGccuucGGGGGu -3'
miRNA:   3'- cGUGgUGGCGUCa--GCCUCCU-----CCUCUu -5'
30173 3' -58.4 NC_006273.1 + 227754 0.68 0.813228
Target:  5'- uCGCCGCCGCAgcuguagcaguuaacGUCGccggccuccAGGAGGAGAu -3'
miRNA:   3'- cGUGGUGGCGU---------------CAGCc--------UCCUCCUCUu -5'
30173 3' -58.4 NC_006273.1 + 197790 0.68 0.792664
Target:  5'- aGC-CCAUCcagaGCgAGaCGGAGGGGGAGAAu -3'
miRNA:   3'- -CGuGGUGG----CG-UCaGCCUCCUCCUCUU- -5'
30173 3' -58.4 NC_006273.1 + 185228 0.69 0.760404
Target:  5'- cGUGCCGCCGCgccguaguucuccgaAGgCGGAcGGAGGAGu- -3'
miRNA:   3'- -CGUGGUGGCG---------------UCaGCCU-CCUCCUCuu -5'
30173 3' -58.4 NC_006273.1 + 224962 0.69 0.756728
Target:  5'- uGCACCuaUGgAGUCcGGGGAGGAGGAa -3'
miRNA:   3'- -CGUGGugGCgUCAGcCUCCUCCUCUU- -5'
30173 3' -58.4 NC_006273.1 + 89368 0.69 0.751184
Target:  5'- cGgGCCGCgGCAGUCgcuuagccaccaccuGGAcGGGGGGGAc -3'
miRNA:   3'- -CgUGGUGgCGUCAG---------------CCU-CCUCCUCUu -5'
30173 3' -58.4 NC_006273.1 + 194904 0.69 0.747468
Target:  5'- cGCACCgGCgGCGGUCGGGGuGugucGGGGGc -3'
miRNA:   3'- -CGUGG-UGgCGUCAGCCUC-Cu---CCUCUu -5'
30173 3' -58.4 NC_006273.1 + 155015 0.69 0.747468
Target:  5'- -gGCCGCCGCucccgcUUGGAgcGGGGGAGAGa -3'
miRNA:   3'- cgUGGUGGCGuc----AGCCU--CCUCCUCUU- -5'
30173 3' -58.4 NC_006273.1 + 234842 0.69 0.747468
Target:  5'- cGCACCgGCgGCGGUCGGGGuGugucGGGGGc -3'
miRNA:   3'- -CGUGG-UGgCGUCAGCCUC-Cu---CCUCUu -5'
30173 3' -58.4 NC_006273.1 + 11 0.69 0.747468
Target:  5'- cGCACCgGCgGCGGUCGGGGuGugucGGGGGc -3'
miRNA:   3'- -CGUGG-UGgCGUCAGCCUC-Cu---CCUCUu -5'
30173 3' -58.4 NC_006273.1 + 135391 0.69 0.738115
Target:  5'- aCGCCACUGcCGG-CGGAcaacagcggGGAGGAGAc -3'
miRNA:   3'- cGUGGUGGC-GUCaGCCU---------CCUCCUCUu -5'
30173 3' -58.4 NC_006273.1 + 167679 0.69 0.722975
Target:  5'- -gGCCGCCGUucgucGUCacggggcggcgcgagGGAGGAGGAGGu -3'
miRNA:   3'- cgUGGUGGCGu----CAG---------------CCUCCUCCUCUu -5'
30173 3' -58.4 NC_006273.1 + 56106 0.69 0.719161
Target:  5'- cGCugCGUCGCAGUCaGAcccacuaccuGGAGGAGAu -3'
miRNA:   3'- -CGugGUGGCGUCAGcCU----------CCUCCUCUu -5'
30173 3' -58.4 NC_006273.1 + 105141 0.69 0.719161
Target:  5'- aCGCCACCgGCGGUCGuucAGGGGGAa-- -3'
miRNA:   3'- cGUGGUGG-CGUCAGCc--UCCUCCUcuu -5'
30173 3' -58.4 NC_006273.1 + 84779 0.7 0.709576
Target:  5'- -aACgC-CCGCGGUC-GAGGAGGAGGGg -3'
miRNA:   3'- cgUG-GuGGCGUCAGcCUCCUCCUCUU- -5'
30173 3' -58.4 NC_006273.1 + 98811 0.7 0.687312
Target:  5'- cCGCCGCCGUucgCGGAGGAGGuuccugcuccguucGGAAu -3'
miRNA:   3'- cGUGGUGGCGucaGCCUCCUCC--------------UCUU- -5'
30173 3' -58.4 NC_006273.1 + 36529 0.7 0.670707
Target:  5'- -gACCggcggACCGCGGagCGGAGGAGGuGAc -3'
miRNA:   3'- cgUGG-----UGGCGUCa-GCCUCCUCCuCUu -5'
30173 3' -58.4 NC_006273.1 + 233681 0.7 0.660897
Target:  5'- cCACCGCCGCGG-CGGAuuuccgcgcGGGGGAcGGGg -3'
miRNA:   3'- cGUGGUGGCGUCaGCCU---------CCUCCU-CUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.