miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30173 3' -58.4 NC_006273.1 + 11 0.69 0.747468
Target:  5'- cGCACCgGCgGCGGUCGGGGuGugucGGGGGc -3'
miRNA:   3'- -CGUGG-UGgCGUCAGCCUC-Cu---CCUCUu -5'
30173 3' -58.4 NC_006273.1 + 932 0.67 0.834514
Target:  5'- uCGCgGCCGCGGggcCGGAGGGccuucGGGGGu -3'
miRNA:   3'- cGUGgUGGCGUCa--GCCUCCU-----CCUCUu -5'
30173 3' -58.4 NC_006273.1 + 4622 0.72 0.553135
Target:  5'- gGUACUGCUgaugGUAGUCGGGacGGAGGAGAGa -3'
miRNA:   3'- -CGUGGUGG----CGUCAGCCU--CCUCCUCUU- -5'
30173 3' -58.4 NC_006273.1 + 7712 0.75 0.39189
Target:  5'- -gGCCGCgGCAG-CGG-GGAGGAGAGg -3'
miRNA:   3'- cgUGGUGgCGUCaGCCuCCUCCUCUU- -5'
30173 3' -58.4 NC_006273.1 + 34041 0.66 0.89233
Target:  5'- aCGCCACCGCGGagGGcgacaaaGAGGAGu- -3'
miRNA:   3'- cGUGGUGGCGUCagCCuc-----CUCCUCuu -5'
30173 3' -58.4 NC_006273.1 + 36529 0.7 0.670707
Target:  5'- -gACCggcggACCGCGGagCGGAGGAGGuGAc -3'
miRNA:   3'- cgUGG-----UGGCGUCa-GCCUCCUCCuCUu -5'
30173 3' -58.4 NC_006273.1 + 36857 0.66 0.89233
Target:  5'- cGCGCUACguagccgguCGCGGaccgCGGAGucGGGGAGAAg -3'
miRNA:   3'- -CGUGGUG---------GCGUCa---GCCUC--CUCCUCUU- -5'
30173 3' -58.4 NC_006273.1 + 40374 0.66 0.871409
Target:  5'- cGCGCuCGCCccCGGUuucaggaUGGAGGGGGAGGc -3'
miRNA:   3'- -CGUG-GUGGc-GUCA-------GCCUCCUCCUCUu -5'
30173 3' -58.4 NC_006273.1 + 43404 0.67 0.857635
Target:  5'- cGCcCCACC-UAGagGGAGGGGGGGu- -3'
miRNA:   3'- -CGuGGUGGcGUCagCCUCCUCCUCuu -5'
30173 3' -58.4 NC_006273.1 + 45319 0.66 0.888436
Target:  5'- gGCGCCGacgguguucguccccCCGCcGUCGGAGGAGu---- -3'
miRNA:   3'- -CGUGGU---------------GGCGuCAGCCUCCUCcucuu -5'
30173 3' -58.4 NC_006273.1 + 56106 0.69 0.719161
Target:  5'- cGCugCGUCGCAGUCaGAcccacuaccuGGAGGAGAu -3'
miRNA:   3'- -CGugGUGGCGUCAGcCU----------CCUCCUCUu -5'
30173 3' -58.4 NC_006273.1 + 66043 0.66 0.89233
Target:  5'- gGCGCuCAUCGCc-UgGGuGGAGGAGAu -3'
miRNA:   3'- -CGUG-GUGGCGucAgCCuCCUCCUCUu -5'
30173 3' -58.4 NC_006273.1 + 69444 0.72 0.543521
Target:  5'- gGCGCCGCUGUAG-CGGcGGAGGAc-- -3'
miRNA:   3'- -CGUGGUGGCGUCaGCCuCCUCCUcuu -5'
30173 3' -58.4 NC_006273.1 + 72896 0.66 0.885798
Target:  5'- uCACCGUCGUucUCGGAGGAGG-GAGg -3'
miRNA:   3'- cGUGGUGGCGucAGCCUCCUCCuCUU- -5'
30173 3' -58.4 NC_006273.1 + 73771 0.66 0.894883
Target:  5'- gGCGCCGCCaGCggcgaccauGGUgGGAGagcaacucggaugacGAGGAGGAg -3'
miRNA:   3'- -CGUGGUGG-CG---------UCAgCCUC---------------CUCCUCUU- -5'
30173 3' -58.4 NC_006273.1 + 84779 0.7 0.709576
Target:  5'- -aACgC-CCGCGGUC-GAGGAGGAGGGg -3'
miRNA:   3'- cgUG-GuGGCGUCAGcCUCCUCCUCUU- -5'
30173 3' -58.4 NC_006273.1 + 84841 0.66 0.885133
Target:  5'- gGCACCcgagacgGCCGCGG-CGGccgucaGGGuGGAGGg -3'
miRNA:   3'- -CGUGG-------UGGCGUCaGCC------UCCuCCUCUu -5'
30173 3' -58.4 NC_006273.1 + 84909 0.66 0.872115
Target:  5'- aGCuGCCACCGCGcUgGGAacGGGGAGAGg -3'
miRNA:   3'- -CG-UGGUGGCGUcAgCCUc-CUCCUCUU- -5'
30173 3' -58.4 NC_006273.1 + 85725 0.67 0.8424
Target:  5'- cCACCuaacGCCGCGGgCGGcguGGAgGGAGAAa -3'
miRNA:   3'- cGUGG----UGGCGUCaGCCu--CCU-CCUCUU- -5'
30173 3' -58.4 NC_006273.1 + 89368 0.69 0.751184
Target:  5'- cGgGCCGCgGCAGUCgcuuagccaccaccuGGAcGGGGGGGAc -3'
miRNA:   3'- -CgUGGUGgCGUCAG---------------CCU-CCUCCUCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.