miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30173 3' -58.4 NC_006273.1 + 210904 0.66 0.89233
Target:  5'- cCACCGCCGUGGagauUUGGAaGAGGAGc- -3'
miRNA:   3'- cGUGGUGGCGUC----AGCCUcCUCCUCuu -5'
30173 3' -58.4 NC_006273.1 + 154583 0.67 0.850109
Target:  5'- cCACCAacaaccccuCCGUccAGgcucaCGGAGGGGGAGGAu -3'
miRNA:   3'- cGUGGU---------GGCG--UCa----GCCUCCUCCUCUU- -5'
30173 3' -58.4 NC_006273.1 + 43404 0.67 0.857635
Target:  5'- cGCcCCACC-UAGagGGAGGGGGGGu- -3'
miRNA:   3'- -CGuGGUGGcGUCagCCUCCUCCUCuu -5'
30173 3' -58.4 NC_006273.1 + 40374 0.66 0.871409
Target:  5'- cGCGCuCGCCccCGGUuucaggaUGGAGGGGGAGGc -3'
miRNA:   3'- -CGUG-GUGGc-GUCA-------GCCUCCUCCUCUu -5'
30173 3' -58.4 NC_006273.1 + 193055 0.66 0.879058
Target:  5'- aGCAgCGagcuaCGCAGaCGGAauaucuGGAGGAGAGu -3'
miRNA:   3'- -CGUgGUg----GCGUCaGCCU------CCUCCUCUU- -5'
30173 3' -58.4 NC_006273.1 + 84841 0.66 0.885133
Target:  5'- gGCACCcgagacgGCCGCGG-CGGccgucaGGGuGGAGGg -3'
miRNA:   3'- -CGUGG-------UGGCGUCaGCC------UCCuCCUCUu -5'
30173 3' -58.4 NC_006273.1 + 132369 0.66 0.885798
Target:  5'- cGCuGCCGCCGCGGcguuUCGuccGGAGGAGc- -3'
miRNA:   3'- -CG-UGGUGGCGUC----AGCcu-CCUCCUCuu -5'
30173 3' -58.4 NC_006273.1 + 207919 0.66 0.89233
Target:  5'- aGCACCagguguagaaaACCGUGGUaaCGGA-GAGGAGGc -3'
miRNA:   3'- -CGUGG-----------UGGCGUCA--GCCUcCUCCUCUu -5'
30173 3' -58.4 NC_006273.1 + 34041 0.66 0.89233
Target:  5'- aCGCCACCGCGGagGGcgacaaaGAGGAGu- -3'
miRNA:   3'- cGUGGUGGCGUCagCCuc-----CUCCUCuu -5'
30173 3' -58.4 NC_006273.1 + 195824 0.67 0.834514
Target:  5'- uCGCgGCCGCGGggcCGGAGGGccuucGGGGGu -3'
miRNA:   3'- cGUGgUGGCGUCa--GCCUCCU-----CCUCUu -5'
30173 3' -58.4 NC_006273.1 + 224962 0.69 0.756728
Target:  5'- uGCACCuaUGgAGUCcGGGGAGGAGGAa -3'
miRNA:   3'- -CGUGGugGCgUCAGcCUCCUCCUCUU- -5'
30173 3' -58.4 NC_006273.1 + 155015 0.69 0.747468
Target:  5'- -gGCCGCCGCucccgcUUGGAgcGGGGGAGAGa -3'
miRNA:   3'- cgUGGUGGCGuc----AGCCU--CCUCCUCUU- -5'
30173 3' -58.4 NC_006273.1 + 7712 0.75 0.39189
Target:  5'- -gGCCGCgGCAG-CGG-GGAGGAGAGg -3'
miRNA:   3'- cgUGGUGgCGUCaGCCuCCUCCUCUU- -5'
30173 3' -58.4 NC_006273.1 + 69444 0.72 0.543521
Target:  5'- gGCGCCGCUGUAG-CGGcGGAGGAc-- -3'
miRNA:   3'- -CGUGGUGGCGUCaGCCuCCUCCUcuu -5'
30173 3' -58.4 NC_006273.1 + 4622 0.72 0.553135
Target:  5'- gGUACUGCUgaugGUAGUCGGGacGGAGGAGAGa -3'
miRNA:   3'- -CGUGGUGG----CGUCAGCCU--CCUCCUCUU- -5'
30173 3' -58.4 NC_006273.1 + 130967 0.72 0.553135
Target:  5'- aCACCgucaACgGCGGUCGGAgacgggagaagaGGAGGAGGAa -3'
miRNA:   3'- cGUGG----UGgCGUCAGCCU------------CCUCCUCUU- -5'
30173 3' -58.4 NC_006273.1 + 84779 0.7 0.709576
Target:  5'- -aACgC-CCGCGGUC-GAGGAGGAGGGg -3'
miRNA:   3'- cgUG-GuGGCGUCAGcCUCCUCCUCUU- -5'
30173 3' -58.4 NC_006273.1 + 105141 0.69 0.719161
Target:  5'- aCGCCACCgGCGGUCGuucAGGGGGAa-- -3'
miRNA:   3'- cGUGGUGG-CGUCAGCc--UCCUCCUcuu -5'
30173 3' -58.4 NC_006273.1 + 167679 0.69 0.722975
Target:  5'- -gGCCGCCGUucgucGUCacggggcggcgcgagGGAGGAGGAGGu -3'
miRNA:   3'- cgUGGUGGCGu----CAG---------------CCUCCUCCUCUu -5'
30173 3' -58.4 NC_006273.1 + 194904 0.69 0.747468
Target:  5'- cGCACCgGCgGCGGUCGGGGuGugucGGGGGc -3'
miRNA:   3'- -CGUGG-UGgCGUCAGCCUC-Cu---CCUCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.