miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30174 3' -53.3 NC_006273.1 + 30628 0.66 0.992972
Target:  5'- cGAGCgaaaagaaacgaUCGUCGUCGcgucggcaaccgcagAUCGCAGCGGg -3'
miRNA:   3'- cCUCGac----------AGCAGCAGU---------------UGGUGUCGUC- -5'
30174 3' -53.3 NC_006273.1 + 69690 0.66 0.992972
Target:  5'- aGGAGCUGaCGgcCGcCGAUCGCguaGGCAGc -3'
miRNA:   3'- -CCUCGACaGCa-GCaGUUGGUG---UCGUC- -5'
30174 3' -53.3 NC_006273.1 + 207337 0.66 0.992069
Target:  5'- cGGGGCUGgguggagagggaagGUCGcgCcGCCGCAGCAu -3'
miRNA:   3'- -CCUCGACag------------CAGCa-GuUGGUGUCGUc -5'
30174 3' -53.3 NC_006273.1 + 164437 0.66 0.991963
Target:  5'- -----cGUCGUCGUCugcGGCCGCGGCc- -3'
miRNA:   3'- ccucgaCAGCAGCAG---UUGGUGUCGuc -5'
30174 3' -53.3 NC_006273.1 + 88714 0.66 0.991963
Target:  5'- -aAGCg--CGUCGUUAACCcguGCAGCGa -3'
miRNA:   3'- ccUCGacaGCAGCAGUUGG---UGUCGUc -5'
30174 3' -53.3 NC_006273.1 + 111005 0.66 0.991856
Target:  5'- -cGGCUGUCGgcgcuuuUCGUCAugcuGCgACAGCuGg -3'
miRNA:   3'- ccUCGACAGC-------AGCAGU----UGgUGUCGuC- -5'
30174 3' -53.3 NC_006273.1 + 91461 0.66 0.990842
Target:  5'- aGGGGCUcaUCGUCccaAACCGcCAGCAGc -3'
miRNA:   3'- -CCUCGAc-AGCAGcagUUGGU-GUCGUC- -5'
30174 3' -53.3 NC_006273.1 + 227745 0.66 0.990842
Target:  5'- -cAGCUGUCuUCG-CcGCCGCAGCu- -3'
miRNA:   3'- ccUCGACAGcAGCaGuUGGUGUCGuc -5'
30174 3' -53.3 NC_006273.1 + 201960 0.66 0.990842
Target:  5'- cGGGGCUGUCG-CG-C-GCCGCcgacgcccgaGGCGGu -3'
miRNA:   3'- -CCUCGACAGCaGCaGuUGGUG----------UCGUC- -5'
30174 3' -53.3 NC_006273.1 + 203876 0.66 0.989602
Target:  5'- aGGGGUUGcCGgCGUgAGCCagcguuacccaACAGCAGc -3'
miRNA:   3'- -CCUCGACaGCaGCAgUUGG-----------UGUCGUC- -5'
30174 3' -53.3 NC_006273.1 + 20381 0.66 0.988234
Target:  5'- cGGucGCUG-CGaCgGUCGcuGCCACAGCAGc -3'
miRNA:   3'- -CCu-CGACaGCaG-CAGU--UGGUGUCGUC- -5'
30174 3' -53.3 NC_006273.1 + 116695 0.66 0.988234
Target:  5'- cGAGCUGguuucgcgCGggccCGUCAGuCCGCuGCAGc -3'
miRNA:   3'- cCUCGACa-------GCa---GCAGUU-GGUGuCGUC- -5'
30174 3' -53.3 NC_006273.1 + 84889 0.66 0.98809
Target:  5'- gGGAGCUGUUGgcaCGUC-GCCACucucauccggucuGGaCAGa -3'
miRNA:   3'- -CCUCGACAGCa--GCAGuUGGUG-------------UC-GUC- -5'
30174 3' -53.3 NC_006273.1 + 80384 0.66 0.986731
Target:  5'- gGGAGCggcgGcCGUgG-CGGCgGCAGCGGc -3'
miRNA:   3'- -CCUCGa---CaGCAgCaGUUGgUGUCGUC- -5'
30174 3' -53.3 NC_006273.1 + 147552 0.66 0.986731
Target:  5'- -aGGCUGgCGgCGUCGGCgggaGCAGCGGg -3'
miRNA:   3'- ccUCGACaGCaGCAGUUGg---UGUCGUC- -5'
30174 3' -53.3 NC_006273.1 + 198111 0.67 0.983286
Target:  5'- aGGGCUGcUCGg---CGGCCACGGCGu -3'
miRNA:   3'- cCUCGAC-AGCagcaGUUGGUGUCGUc -5'
30174 3' -53.3 NC_006273.1 + 169040 0.67 0.983286
Target:  5'- uGGcGUUGUCGUCcaaCGGCUGCAGCGc -3'
miRNA:   3'- -CCuCGACAGCAGca-GUUGGUGUCGUc -5'
30174 3' -53.3 NC_006273.1 + 31469 0.67 0.983286
Target:  5'- cGGuGGCUG-CGccuccUCGUCGGCCugGGCu- -3'
miRNA:   3'- -CC-UCGACaGC-----AGCAGUUGGugUCGuc -5'
30174 3' -53.3 NC_006273.1 + 30970 0.67 0.983286
Target:  5'- cGAGCccagCGUgGUCGcGCCGCAGCAc -3'
miRNA:   3'- cCUCGaca-GCAgCAGU-UGGUGUCGUc -5'
30174 3' -53.3 NC_006273.1 + 157832 0.67 0.981329
Target:  5'- aGGGCacgaUGUCGUgGUUAGCggcguGCAGCAGg -3'
miRNA:   3'- cCUCG----ACAGCAgCAGUUGg----UGUCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.