miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30174 3' -53.3 NC_006273.1 + 163371 0.97 0.046899
Target:  5'- cGGGaCUGUCGUCGUCAACCACAGCAGc -3'
miRNA:   3'- cCUC-GACAGCAGCAGUUGGUGUCGUC- -5'
30174 3' -53.3 NC_006273.1 + 185261 0.79 0.506769
Target:  5'- cGGAGgaGUC--UGUCGACCGCAGCGGu -3'
miRNA:   3'- -CCUCgaCAGcaGCAGUUGGUGUCGUC- -5'
30174 3' -53.3 NC_006273.1 + 80969 0.78 0.555454
Target:  5'- cGAGCUGUCGUCGggcaCGGCCACcaGGuCAGa -3'
miRNA:   3'- cCUCGACAGCAGCa---GUUGGUG--UC-GUC- -5'
30174 3' -53.3 NC_006273.1 + 234596 0.76 0.655837
Target:  5'- cGGAcgGCUccGUCGUcCGUguGCCACGGCAGa -3'
miRNA:   3'- -CCU--CGA--CAGCA-GCAguUGGUGUCGUC- -5'
30174 3' -53.3 NC_006273.1 + 39704 0.76 0.655837
Target:  5'- cGGAcgGCUccGUCGUcCGUguGCCACGGCAGa -3'
miRNA:   3'- -CCU--CGA--CAGCA-GCAguUGGUGUCGUC- -5'
30174 3' -53.3 NC_006273.1 + 157370 0.75 0.715639
Target:  5'- uGGGGCUG-CGUCGcCuGCgACGGCGGg -3'
miRNA:   3'- -CCUCGACaGCAGCaGuUGgUGUCGUC- -5'
30174 3' -53.3 NC_006273.1 + 60265 0.74 0.754234
Target:  5'- gGGAccGCUGUCacgCGUCAACgACAGCAc -3'
miRNA:   3'- -CCU--CGACAGca-GCAGUUGgUGUCGUc -5'
30174 3' -53.3 NC_006273.1 + 149525 0.74 0.767375
Target:  5'- cGGGCUG-CGUCGUCAcucaccgccauucuaGCgGCGGCGGu -3'
miRNA:   3'- cCUCGACaGCAGCAGU---------------UGgUGUCGUC- -5'
30174 3' -53.3 NC_006273.1 + 169958 0.73 0.817413
Target:  5'- aGGAGUccuagGUCGgCGUCGA-CACGGCAGg -3'
miRNA:   3'- -CCUCGa----CAGCaGCAGUUgGUGUCGUC- -5'
30174 3' -53.3 NC_006273.1 + 103105 0.72 0.850099
Target:  5'- cGGGGCUggugcuggccacGUCGUCGUCGuguaGCCACA-CGGu -3'
miRNA:   3'- -CCUCGA------------CAGCAGCAGU----UGGUGUcGUC- -5'
30174 3' -53.3 NC_006273.1 + 82082 0.72 0.850099
Target:  5'- aGGAGUgaacgGUCGcCGUU-GCCGCGGCGGu -3'
miRNA:   3'- -CCUCGa----CAGCaGCAGuUGGUGUCGUC- -5'
30174 3' -53.3 NC_006273.1 + 95220 0.72 0.850099
Target:  5'- cGGAGCg--CGUCGUCuACgACGGCGu -3'
miRNA:   3'- -CCUCGacaGCAGCAGuUGgUGUCGUc -5'
30174 3' -53.3 NC_006273.1 + 102652 0.72 0.857807
Target:  5'- --uGCUGUCGUCGUCucCC-CGGCGc -3'
miRNA:   3'- ccuCGACAGCAGCAGuuGGuGUCGUc -5'
30174 3' -53.3 NC_006273.1 + 190690 0.72 0.865317
Target:  5'- -cAGCgg-CGUCGUCucaucuuuGCCACAGCAGc -3'
miRNA:   3'- ccUCGacaGCAGCAGu-------UGGUGUCGUC- -5'
30174 3' -53.3 NC_006273.1 + 92750 0.72 0.865317
Target:  5'- cGGuAGCUcUCGUCGcUCAuguCCACGGCAu -3'
miRNA:   3'- -CC-UCGAcAGCAGC-AGUu--GGUGUCGUc -5'
30174 3' -53.3 NC_006273.1 + 233664 0.72 0.872622
Target:  5'- --cGCUGUCGgcccaGUCGccaccGCCGCGGCGGa -3'
miRNA:   3'- ccuCGACAGCag---CAGU-----UGGUGUCGUC- -5'
30174 3' -53.3 NC_006273.1 + 73299 0.72 0.875486
Target:  5'- cGGAGCgUGUCGgagaCGaCGauuggccaugaccgcGCCACAGCAGa -3'
miRNA:   3'- -CCUCG-ACAGCa---GCaGU---------------UGGUGUCGUC- -5'
30174 3' -53.3 NC_006273.1 + 124041 0.71 0.879718
Target:  5'- aGGAGaCUGUCGUCGUCGguACU--GGCGa -3'
miRNA:   3'- -CCUC-GACAGCAGCAGU--UGGugUCGUc -5'
30174 3' -53.3 NC_006273.1 + 56808 0.71 0.899703
Target:  5'- cGGGCcGUCGUCGUgcaGACCGcCGGCAu -3'
miRNA:   3'- cCUCGaCAGCAGCAg--UUGGU-GUCGUc -5'
30174 3' -53.3 NC_006273.1 + 151415 0.71 0.905918
Target:  5'- --uGCUGUCGUCGUaGGCgGCGGCu- -3'
miRNA:   3'- ccuCGACAGCAGCAgUUGgUGUCGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.