miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30174 3' -53.3 NC_006273.1 + 74846 0.67 0.979205
Target:  5'- cGGGCccgcGUCcUCGUCGAUCACcAGCGGu -3'
miRNA:   3'- cCUCGa---CAGcAGCAGUUGGUG-UCGUC- -5'
30174 3' -53.3 NC_006273.1 + 175339 0.67 0.979205
Target:  5'- uGGGCggggGUCGUUgggcgGUCAGCCA-GGCGGg -3'
miRNA:   3'- cCUCGa---CAGCAG-----CAGUUGGUgUCGUC- -5'
30174 3' -53.3 NC_006273.1 + 85159 0.67 0.979205
Target:  5'- -cAGCgUGUUGcgCGUCAACCGcCAGCGa -3'
miRNA:   3'- ccUCG-ACAGCa-GCAGUUGGU-GUCGUc -5'
30174 3' -53.3 NC_006273.1 + 117125 0.67 0.978983
Target:  5'- cGGAGCgcgaGUCGUaCGUCAaggcgagcguuucGCCugAgGCGGc -3'
miRNA:   3'- -CCUCGa---CAGCA-GCAGU-------------UGGugU-CGUC- -5'
30174 3' -53.3 NC_006273.1 + 38377 0.67 0.978307
Target:  5'- cGGAGCUGcuguuaccgccgcCGUcCGUCGccGCCGCuGCGGu -3'
miRNA:   3'- -CCUCGACa------------GCA-GCAGU--UGGUGuCGUC- -5'
30174 3' -53.3 NC_006273.1 + 213710 0.68 0.974428
Target:  5'- uGGcGCagGUCGUgcaCGUCGGCCAcCAGCGc -3'
miRNA:   3'- -CCuCGa-CAGCA---GCAGUUGGU-GUCGUc -5'
30174 3' -53.3 NC_006273.1 + 177348 0.68 0.974428
Target:  5'- uGGuuuGCUGUUagCGUCGACCACGG-AGa -3'
miRNA:   3'- -CCu--CGACAGcaGCAGUUGGUGUCgUC- -5'
30174 3' -53.3 NC_006273.1 + 167159 0.68 0.974428
Target:  5'- uGGcGUUGcCGcCGUUgguGGCCACGGCGGg -3'
miRNA:   3'- -CCuCGACaGCaGCAG---UUGGUGUCGUC- -5'
30174 3' -53.3 NC_006273.1 + 60833 0.68 0.974428
Target:  5'- cGAGgUGUgaaUGUCGUCAGCCA-GGCAc -3'
miRNA:   3'- cCUCgACA---GCAGCAGUUGGUgUCGUc -5'
30174 3' -53.3 NC_006273.1 + 196979 0.68 0.97176
Target:  5'- --cGCUGUUGcCGcC-ACCGCAGCGGc -3'
miRNA:   3'- ccuCGACAGCaGCaGuUGGUGUCGUC- -5'
30174 3' -53.3 NC_006273.1 + 112775 0.68 0.97176
Target:  5'- gGGGGUUGUacaCG-CAACCACGGUGGa -3'
miRNA:   3'- -CCUCGACAgcaGCaGUUGGUGUCGUC- -5'
30174 3' -53.3 NC_006273.1 + 221506 0.68 0.970067
Target:  5'- gGGAGCaGUCGUCGUgcugauugaaCAACUcacaaaaauacaaaaACAGUAGc -3'
miRNA:   3'- -CCUCGaCAGCAGCA----------GUUGG---------------UGUCGUC- -5'
30174 3' -53.3 NC_006273.1 + 189781 0.68 0.968898
Target:  5'- --uGCUGUUGUUGUagAGCCGCGGCc- -3'
miRNA:   3'- ccuCGACAGCAGCAg-UUGGUGUCGuc -5'
30174 3' -53.3 NC_006273.1 + 89351 0.68 0.965835
Target:  5'- cGGAGUccUGggugUGUCGg--GCCGCGGCAGu -3'
miRNA:   3'- -CCUCG--ACa---GCAGCaguUGGUGUCGUC- -5'
30174 3' -53.3 NC_006273.1 + 31659 0.69 0.959086
Target:  5'- aGGccAGCUG-CGUCGUCAAggACGGCGu -3'
miRNA:   3'- -CC--UCGACaGCAGCAGUUggUGUCGUc -5'
30174 3' -53.3 NC_006273.1 + 121014 0.69 0.955389
Target:  5'- --cGCUgguccagacGUCGUCGUCGcCCugGGCGGc -3'
miRNA:   3'- ccuCGA---------CAGCAGCAGUuGGugUCGUC- -5'
30174 3' -53.3 NC_006273.1 + 46074 0.69 0.951472
Target:  5'- aGGAGCUGUUucccUCcugcaaggCAACCGCAGCAu -3'
miRNA:   3'- -CCUCGACAGc---AGca------GUUGGUGUCGUc -5'
30174 3' -53.3 NC_006273.1 + 47833 0.69 0.942963
Target:  5'- cGGAcCUGUCGUCGcUgGGCCucggcgccguACGGCGGg -3'
miRNA:   3'- -CCUcGACAGCAGC-AgUUGG----------UGUCGUC- -5'
30174 3' -53.3 NC_006273.1 + 134977 0.69 0.942963
Target:  5'- ----gUGUCGUCGUCGcgacccGCCACAGCc- -3'
miRNA:   3'- ccucgACAGCAGCAGU------UGGUGUCGuc -5'
30174 3' -53.3 NC_006273.1 + 208383 0.69 0.938366
Target:  5'- uGAGCgUGcCGUUGUCAACC-CGGUAa -3'
miRNA:   3'- cCUCG-ACaGCAGCAGUUGGuGUCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.