miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30174 3' -53.3 NC_006273.1 + 18836 0.7 0.933538
Target:  5'- aGGAGCUGccCGUCuGUC-ACCACAcGCuGa -3'
miRNA:   3'- -CCUCGACa-GCAG-CAGuUGGUGU-CGuC- -5'
30174 3' -53.3 NC_006273.1 + 20381 0.66 0.988234
Target:  5'- cGGucGCUG-CGaCgGUCGcuGCCACAGCAGc -3'
miRNA:   3'- -CCu-CGACaGCaG-CAGU--UGGUGUCGUC- -5'
30174 3' -53.3 NC_006273.1 + 30628 0.66 0.992972
Target:  5'- cGAGCgaaaagaaacgaUCGUCGUCGcgucggcaaccgcagAUCGCAGCGGg -3'
miRNA:   3'- cCUCGac----------AGCAGCAGU---------------UGGUGUCGUC- -5'
30174 3' -53.3 NC_006273.1 + 30970 0.67 0.983286
Target:  5'- cGAGCccagCGUgGUCGcGCCGCAGCAc -3'
miRNA:   3'- cCUCGaca-GCAgCAGU-UGGUGUCGUc -5'
30174 3' -53.3 NC_006273.1 + 31469 0.67 0.983286
Target:  5'- cGGuGGCUG-CGccuccUCGUCGGCCugGGCu- -3'
miRNA:   3'- -CC-UCGACaGC-----AGCAGUUGGugUCGuc -5'
30174 3' -53.3 NC_006273.1 + 31659 0.69 0.959086
Target:  5'- aGGccAGCUG-CGUCGUCAAggACGGCGu -3'
miRNA:   3'- -CC--UCGACaGCAGCAGUUggUGUCGUc -5'
30174 3' -53.3 NC_006273.1 + 38377 0.67 0.978307
Target:  5'- cGGAGCUGcuguuaccgccgcCGUcCGUCGccGCCGCuGCGGu -3'
miRNA:   3'- -CCUCGACa------------GCA-GCAGU--UGGUGuCGUC- -5'
30174 3' -53.3 NC_006273.1 + 39704 0.76 0.655837
Target:  5'- cGGAcgGCUccGUCGUcCGUguGCCACGGCAGa -3'
miRNA:   3'- -CCU--CGA--CAGCA-GCAguUGGUGUCGUC- -5'
30174 3' -53.3 NC_006273.1 + 46074 0.69 0.951472
Target:  5'- aGGAGCUGUUucccUCcugcaaggCAACCGCAGCAu -3'
miRNA:   3'- -CCUCGACAGc---AGca------GUUGGUGUCGUc -5'
30174 3' -53.3 NC_006273.1 + 47833 0.69 0.942963
Target:  5'- cGGAcCUGUCGUCGcUgGGCCucggcgccguACGGCGGg -3'
miRNA:   3'- -CCUcGACAGCAGC-AgUUGG----------UGUCGUC- -5'
30174 3' -53.3 NC_006273.1 + 56808 0.71 0.899703
Target:  5'- cGGGCcGUCGUCGUgcaGACCGcCGGCAu -3'
miRNA:   3'- cCUCGaCAGCAGCAg--UUGGU-GUCGUc -5'
30174 3' -53.3 NC_006273.1 + 58428 0.7 0.933042
Target:  5'- -aAGCUGcuacgcuUCGUCGUCAACgAUGGCAc -3'
miRNA:   3'- ccUCGAC-------AGCAGCAGUUGgUGUCGUc -5'
30174 3' -53.3 NC_006273.1 + 60265 0.74 0.754234
Target:  5'- gGGAccGCUGUCacgCGUCAACgACAGCAc -3'
miRNA:   3'- -CCU--CGACAGca-GCAGUUGgUGUCGUc -5'
30174 3' -53.3 NC_006273.1 + 60833 0.68 0.974428
Target:  5'- cGAGgUGUgaaUGUCGUCAGCCA-GGCAc -3'
miRNA:   3'- cCUCgACA---GCAGCAGUUGGUgUCGUc -5'
30174 3' -53.3 NC_006273.1 + 69690 0.66 0.992972
Target:  5'- aGGAGCUGaCGgcCGcCGAUCGCguaGGCAGc -3'
miRNA:   3'- -CCUCGACaGCa-GCaGUUGGUG---UCGUC- -5'
30174 3' -53.3 NC_006273.1 + 73299 0.72 0.875486
Target:  5'- cGGAGCgUGUCGgagaCGaCGauuggccaugaccgcGCCACAGCAGa -3'
miRNA:   3'- -CCUCG-ACAGCa---GCaGU---------------UGGUGUCGUC- -5'
30174 3' -53.3 NC_006273.1 + 74846 0.67 0.979205
Target:  5'- cGGGCccgcGUCcUCGUCGAUCACcAGCGGu -3'
miRNA:   3'- cCUCGa---CAGcAGCAGUUGGUG-UCGUC- -5'
30174 3' -53.3 NC_006273.1 + 80384 0.66 0.986731
Target:  5'- gGGAGCggcgGcCGUgG-CGGCgGCAGCGGc -3'
miRNA:   3'- -CCUCGa---CaGCAgCaGUUGgUGUCGUC- -5'
30174 3' -53.3 NC_006273.1 + 80969 0.78 0.555454
Target:  5'- cGAGCUGUCGUCGggcaCGGCCACcaGGuCAGa -3'
miRNA:   3'- cCUCGACAGCAGCa---GUUGGUG--UC-GUC- -5'
30174 3' -53.3 NC_006273.1 + 82082 0.72 0.850099
Target:  5'- aGGAGUgaacgGUCGcCGUU-GCCGCGGCGGu -3'
miRNA:   3'- -CCUCGa----CAGCaGCAGuUGGUGUCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.