Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30174 | 3' | -53.3 | NC_006273.1 | + | 60833 | 0.68 | 0.974428 |
Target: 5'- cGAGgUGUgaaUGUCGUCAGCCA-GGCAc -3' miRNA: 3'- cCUCgACA---GCAGCAGUUGGUgUCGUc -5' |
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30174 | 3' | -53.3 | NC_006273.1 | + | 208383 | 0.69 | 0.938366 |
Target: 5'- uGAGCgUGcCGUUGUCAACC-CGGUAa -3' miRNA: 3'- cCUCG-ACaGCAGCAGUUGGuGUCGUc -5' |
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30174 | 3' | -53.3 | NC_006273.1 | + | 134977 | 0.69 | 0.942963 |
Target: 5'- ----gUGUCGUCGUCGcgacccGCCACAGCc- -3' miRNA: 3'- ccucgACAGCAGCAGU------UGGUGUCGuc -5' |
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30174 | 3' | -53.3 | NC_006273.1 | + | 46074 | 0.69 | 0.951472 |
Target: 5'- aGGAGCUGUUucccUCcugcaaggCAACCGCAGCAu -3' miRNA: 3'- -CCUCGACAGc---AGca------GUUGGUGUCGUc -5' |
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30174 | 3' | -53.3 | NC_006273.1 | + | 121014 | 0.69 | 0.955389 |
Target: 5'- --cGCUgguccagacGUCGUCGUCGcCCugGGCGGc -3' miRNA: 3'- ccuCGA---------CAGCAGCAGUuGGugUCGUC- -5' |
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30174 | 3' | -53.3 | NC_006273.1 | + | 189781 | 0.68 | 0.968898 |
Target: 5'- --uGCUGUUGUUGUagAGCCGCGGCc- -3' miRNA: 3'- ccuCGACAGCAGCAg-UUGGUGUCGuc -5' |
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30174 | 3' | -53.3 | NC_006273.1 | + | 112775 | 0.68 | 0.97176 |
Target: 5'- gGGGGUUGUacaCG-CAACCACGGUGGa -3' miRNA: 3'- -CCUCGACAgcaGCaGUUGGUGUCGUC- -5' |
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30174 | 3' | -53.3 | NC_006273.1 | + | 167159 | 0.68 | 0.974428 |
Target: 5'- uGGcGUUGcCGcCGUUgguGGCCACGGCGGg -3' miRNA: 3'- -CCuCGACaGCaGCAG---UUGGUGUCGUC- -5' |
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30174 | 3' | -53.3 | NC_006273.1 | + | 177348 | 0.68 | 0.974428 |
Target: 5'- uGGuuuGCUGUUagCGUCGACCACGG-AGa -3' miRNA: 3'- -CCu--CGACAGcaGCAGUUGGUGUCgUC- -5' |
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30174 | 3' | -53.3 | NC_006273.1 | + | 151415 | 0.71 | 0.905918 |
Target: 5'- --uGCUGUCGUCGUaGGCgGCGGCu- -3' miRNA: 3'- ccuCGACAGCAGCAgUUGgUGUCGuc -5' |
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30174 | 3' | -53.3 | NC_006273.1 | + | 56808 | 0.71 | 0.899703 |
Target: 5'- cGGGCcGUCGUCGUgcaGACCGcCGGCAu -3' miRNA: 3'- cCUCGaCAGCAGCAg--UUGGU-GUCGUc -5' |
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30174 | 3' | -53.3 | NC_006273.1 | + | 124041 | 0.71 | 0.879718 |
Target: 5'- aGGAGaCUGUCGUCGUCGguACU--GGCGa -3' miRNA: 3'- -CCUC-GACAGCAGCAGU--UGGugUCGUc -5' |
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30174 | 3' | -53.3 | NC_006273.1 | + | 80969 | 0.78 | 0.555454 |
Target: 5'- cGAGCUGUCGUCGggcaCGGCCACcaGGuCAGa -3' miRNA: 3'- cCUCGACAGCAGCa---GUUGGUG--UC-GUC- -5' |
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30174 | 3' | -53.3 | NC_006273.1 | + | 234596 | 0.76 | 0.655837 |
Target: 5'- cGGAcgGCUccGUCGUcCGUguGCCACGGCAGa -3' miRNA: 3'- -CCU--CGA--CAGCA-GCAguUGGUGUCGUC- -5' |
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30174 | 3' | -53.3 | NC_006273.1 | + | 60265 | 0.74 | 0.754234 |
Target: 5'- gGGAccGCUGUCacgCGUCAACgACAGCAc -3' miRNA: 3'- -CCU--CGACAGca-GCAGUUGgUGUCGUc -5' |
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30174 | 3' | -53.3 | NC_006273.1 | + | 149525 | 0.74 | 0.767375 |
Target: 5'- cGGGCUG-CGUCGUCAcucaccgccauucuaGCgGCGGCGGu -3' miRNA: 3'- cCUCGACaGCAGCAGU---------------UGgUGUCGUC- -5' |
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30174 | 3' | -53.3 | NC_006273.1 | + | 169958 | 0.73 | 0.817413 |
Target: 5'- aGGAGUccuagGUCGgCGUCGA-CACGGCAGg -3' miRNA: 3'- -CCUCGa----CAGCaGCAGUUgGUGUCGUC- -5' |
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30174 | 3' | -53.3 | NC_006273.1 | + | 103105 | 0.72 | 0.850099 |
Target: 5'- cGGGGCUggugcuggccacGUCGUCGUCGuguaGCCACA-CGGu -3' miRNA: 3'- -CCUCGA------------CAGCAGCAGU----UGGUGUcGUC- -5' |
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30174 | 3' | -53.3 | NC_006273.1 | + | 190690 | 0.72 | 0.865317 |
Target: 5'- -cAGCgg-CGUCGUCucaucuuuGCCACAGCAGc -3' miRNA: 3'- ccUCGacaGCAGCAGu-------UGGUGUCGUC- -5' |
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30174 | 3' | -53.3 | NC_006273.1 | + | 73299 | 0.72 | 0.875486 |
Target: 5'- cGGAGCgUGUCGgagaCGaCGauuggccaugaccgcGCCACAGCAGa -3' miRNA: 3'- -CCUCG-ACAGCa---GCaGU---------------UGGUGUCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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