miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30174 5' -60.5 NC_006273.1 + 144399 0.66 0.823009
Target:  5'- -uUCGUCaGCGGCUGUCUgcccggcgCCGCGGCgGc -3'
miRNA:   3'- cuGGCGG-CGUCGACAGA--------GGUGUCGgC- -5'
30174 5' -60.5 NC_006273.1 + 38481 0.66 0.823009
Target:  5'- -cCCGCCgGCGGCcuccGUCUCCgu-GCCGc -3'
miRNA:   3'- cuGGCGG-CGUCGa---CAGAGGuguCGGC- -5'
30174 5' -60.5 NC_006273.1 + 60591 0.66 0.823009
Target:  5'- gGACCGaUC-CAGC---CUCCGCGGCCGg -3'
miRNA:   3'- -CUGGC-GGcGUCGacaGAGGUGUCGGC- -5'
30174 5' -60.5 NC_006273.1 + 233374 0.66 0.823009
Target:  5'- -cCCGCCgGCGGCcuccGUCUCCgu-GCCGc -3'
miRNA:   3'- cuGGCGG-CGUCGa---CAGAGGuguCGGC- -5'
30174 5' -60.5 NC_006273.1 + 165210 0.66 0.823009
Target:  5'- ---aGCCGCGGCacagGUCgUCCACgcacguguacacGGCCGg -3'
miRNA:   3'- cuggCGGCGUCGa---CAG-AGGUG------------UCGGC- -5'
30174 5' -60.5 NC_006273.1 + 70924 0.66 0.823009
Target:  5'- aGCCGCCGC-GCcgacaucGUCaucgagcggCCGCGGCCGc -3'
miRNA:   3'- cUGGCGGCGuCGa------CAGa--------GGUGUCGGC- -5'
30174 5' -60.5 NC_006273.1 + 65203 0.66 0.823009
Target:  5'- aGAUCGCCGC-GCguuugGUCUCCACcuaucGCg- -3'
miRNA:   3'- -CUGGCGGCGuCGa----CAGAGGUGu----CGgc -5'
30174 5' -60.5 NC_006273.1 + 169838 0.66 0.819759
Target:  5'- -uUCGCCGCAGCUGUaggacggugguaCCGCGGaCGa -3'
miRNA:   3'- cuGGCGGCGUCGACAga----------GGUGUCgGC- -5'
30174 5' -60.5 NC_006273.1 + 198537 0.66 0.818124
Target:  5'- cGACCGgcuaCGUAGCgcgugucccugccaGUCUCCGCAGUUa -3'
miRNA:   3'- -CUGGCg---GCGUCGa-------------CAGAGGUGUCGGc -5'
30174 5' -60.5 NC_006273.1 + 19894 0.66 0.816484
Target:  5'- cGACCGCCGCuuuggucuggaucGCUcccgcauuugcccGUCUacgaugugcguuccCCGCGGCCGu -3'
miRNA:   3'- -CUGGCGGCGu------------CGA-------------CAGA--------------GGUGUCGGC- -5'
30174 5' -60.5 NC_006273.1 + 135435 0.66 0.814837
Target:  5'- aGCgGCUGCGcGCUcGUCUCCAC-GCuCGa -3'
miRNA:   3'- cUGgCGGCGU-CGA-CAGAGGUGuCG-GC- -5'
30174 5' -60.5 NC_006273.1 + 190902 0.66 0.814837
Target:  5'- cACCGCCGCucgcccGUUGUCg-CGCGGCUu -3'
miRNA:   3'- cUGGCGGCGu-----CGACAGagGUGUCGGc -5'
30174 5' -60.5 NC_006273.1 + 162201 0.66 0.814837
Target:  5'- uGAUCgGCCGCGGUg--CgCUGCAGCCGg -3'
miRNA:   3'- -CUGG-CGGCGUCGacaGaGGUGUCGGC- -5'
30174 5' -60.5 NC_006273.1 + 121705 0.66 0.814837
Target:  5'- aGCCGCUGCGcacGCUcUCggUCACGGCCa -3'
miRNA:   3'- cUGGCGGCGU---CGAcAGa-GGUGUCGGc -5'
30174 5' -60.5 NC_006273.1 + 141009 0.66 0.806516
Target:  5'- aGACugCGCCGCGGCUGUUaCCgACgucacuuugAGCCa -3'
miRNA:   3'- -CUG--GCGGCGUCGACAGaGG-UG---------UCGGc -5'
30174 5' -60.5 NC_006273.1 + 153776 0.66 0.806516
Target:  5'- aGGCCGCUuCGGCc-UCcgCCGCGGCCGc -3'
miRNA:   3'- -CUGGCGGcGUCGacAGa-GGUGUCGGC- -5'
30174 5' -60.5 NC_006273.1 + 153343 0.66 0.806516
Target:  5'- uGCCGCCGCugccGCU-UCgUCCGaGGCCGg -3'
miRNA:   3'- cUGGCGGCGu---CGAcAG-AGGUgUCGGC- -5'
30174 5' -60.5 NC_006273.1 + 17168 0.66 0.806516
Target:  5'- cGACgGCCGCGccauGCcgGUCgUCCGCcgucGGCCGc -3'
miRNA:   3'- -CUGgCGGCGU----CGa-CAG-AGGUG----UCGGC- -5'
30174 5' -60.5 NC_006273.1 + 191063 0.66 0.806516
Target:  5'- gGugCGUCGCAGUgucagGUgUUCGCAGUCc -3'
miRNA:   3'- -CugGCGGCGUCGa----CAgAGGUGUCGGc -5'
30174 5' -60.5 NC_006273.1 + 65521 0.66 0.803992
Target:  5'- aGAuCCGuuGCGGUUGUgUCCAaaagcuauaaaucaUAGCCa -3'
miRNA:   3'- -CU-GGCggCGUCGACAgAGGU--------------GUCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.