Results 1 - 20 of 144 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
30174 | 5' | -60.5 | NC_006273.1 | + | 184984 | 0.66 | 0.780728 |
Target: 5'- aACCGCCGUucGGCUcugCUCCG-AGCCa -3' miRNA: 3'- cUGGCGGCG--UCGAca-GAGGUgUCGGc -5' |
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30174 | 5' | -60.5 | NC_006273.1 | + | 153776 | 0.66 | 0.806516 |
Target: 5'- aGGCCGCUuCGGCc-UCcgCCGCGGCCGc -3' miRNA: 3'- -CUGGCGGcGUCGacAGa-GGUGUCGGC- -5' |
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30174 | 5' | -60.5 | NC_006273.1 | + | 230528 | 0.66 | 0.798053 |
Target: 5'- gGAUUGCCGCuguGCUGUCagCCGCguuGGuCCGc -3' miRNA: 3'- -CUGGCGGCGu--CGACAGa-GGUG---UC-GGC- -5' |
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30174 | 5' | -60.5 | NC_006273.1 | + | 198537 | 0.66 | 0.818124 |
Target: 5'- cGACCGgcuaCGUAGCgcgugucccugccaGUCUCCGCAGUUa -3' miRNA: 3'- -CUGGCg---GCGUCGa-------------CAGAGGUGUCGGc -5' |
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30174 | 5' | -60.5 | NC_006273.1 | + | 154997 | 0.66 | 0.789454 |
Target: 5'- cGCCGCUGCcGCcg---CCACGGCCGc -3' miRNA: 3'- cUGGCGGCGuCGacagaGGUGUCGGC- -5' |
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30174 | 5' | -60.5 | NC_006273.1 | + | 37283 | 0.66 | 0.798053 |
Target: 5'- uGGCCGCCgaGCAGCccuugCgACGGCCGg -3' miRNA: 3'- -CUGGCGG--CGUCGacagaGgUGUCGGC- -5' |
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30174 | 5' | -60.5 | NC_006273.1 | + | 141009 | 0.66 | 0.806516 |
Target: 5'- aGACugCGCCGCGGCUGUUaCCgACgucacuuugAGCCa -3' miRNA: 3'- -CUG--GCGGCGUCGACAGaGG-UG---------UCGGc -5' |
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30174 | 5' | -60.5 | NC_006273.1 | + | 65203 | 0.66 | 0.823009 |
Target: 5'- aGAUCGCCGC-GCguuugGUCUCCACcuaucGCg- -3' miRNA: 3'- -CUGGCGGCGuCGa----CAGAGGUGu----CGgc -5' |
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30174 | 5' | -60.5 | NC_006273.1 | + | 70924 | 0.66 | 0.823009 |
Target: 5'- aGCCGCCGC-GCcgacaucGUCaucgagcggCCGCGGCCGc -3' miRNA: 3'- cUGGCGGCGuCGa------CAGa--------GGUGUCGGC- -5' |
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30174 | 5' | -60.5 | NC_006273.1 | + | 190902 | 0.66 | 0.814837 |
Target: 5'- cACCGCCGCucgcccGUUGUCg-CGCGGCUu -3' miRNA: 3'- cUGGCGGCGu-----CGACAGagGUGUCGGc -5' |
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30174 | 5' | -60.5 | NC_006273.1 | + | 153343 | 0.66 | 0.806516 |
Target: 5'- uGCCGCCGCugccGCU-UCgUCCGaGGCCGg -3' miRNA: 3'- cUGGCGGCGu---CGAcAG-AGGUgUCGGC- -5' |
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30174 | 5' | -60.5 | NC_006273.1 | + | 19894 | 0.66 | 0.816484 |
Target: 5'- cGACCGCCGCuuuggucuggaucGCUcccgcauuugcccGUCUacgaugugcguuccCCGCGGCCGu -3' miRNA: 3'- -CUGGCGGCGu------------CGA-------------CAGA--------------GGUGUCGGC- -5' |
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30174 | 5' | -60.5 | NC_006273.1 | + | 144399 | 0.66 | 0.823009 |
Target: 5'- -uUCGUCaGCGGCUGUCUgcccggcgCCGCGGCgGc -3' miRNA: 3'- cuGGCGG-CGUCGACAGA--------GGUGUCGgC- -5' |
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30174 | 5' | -60.5 | NC_006273.1 | + | 135435 | 0.66 | 0.814837 |
Target: 5'- aGCgGCUGCGcGCUcGUCUCCAC-GCuCGa -3' miRNA: 3'- cUGgCGGCGU-CGA-CAGAGGUGuCG-GC- -5' |
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30174 | 5' | -60.5 | NC_006273.1 | + | 233374 | 0.66 | 0.823009 |
Target: 5'- -cCCGCCgGCGGCcuccGUCUCCgu-GCCGc -3' miRNA: 3'- cuGGCGG-CGUCGa---CAGAGGuguCGGC- -5' |
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30174 | 5' | -60.5 | NC_006273.1 | + | 87532 | 0.66 | 0.780728 |
Target: 5'- cGCgGCgGCGGUcucUGUCUCUGguGCCGc -3' miRNA: 3'- cUGgCGgCGUCG---ACAGAGGUguCGGC- -5' |
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30174 | 5' | -60.5 | NC_006273.1 | + | 196693 | 0.66 | 0.780728 |
Target: 5'- aGCgGCCGUAGUUGUCgcggUCCGC-GUCGc -3' miRNA: 3'- cUGgCGGCGUCGACAG----AGGUGuCGGC- -5' |
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30174 | 5' | -60.5 | NC_006273.1 | + | 154243 | 0.66 | 0.803992 |
Target: 5'- cGGCCGCC-CAGCUccaUCCGCAaccccucguacgccGCCGa -3' miRNA: 3'- -CUGGCGGcGUCGAcagAGGUGU--------------CGGC- -5' |
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30174 | 5' | -60.5 | NC_006273.1 | + | 23292 | 0.66 | 0.780728 |
Target: 5'- cACCGCCGUca-UGUCUCCGaacucagaGGCCa -3' miRNA: 3'- cUGGCGGCGucgACAGAGGUg-------UCGGc -5' |
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30174 | 5' | -60.5 | NC_006273.1 | + | 165210 | 0.66 | 0.823009 |
Target: 5'- ---aGCCGCGGCacagGUCgUCCACgcacguguacacGGCCGg -3' miRNA: 3'- cuggCGGCGUCGa---CAG-AGGUG------------UCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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