miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30174 5' -60.5 NC_006273.1 + 163406 1.08 0.001851
Target:  5'- gGACCGCCGCAGCUGUCUCCACAGCCGg -3'
miRNA:   3'- -CUGGCGGCGUCGACAGAGGUGUCGGC- -5'
30174 5' -60.5 NC_006273.1 + 150545 0.81 0.131395
Target:  5'- cGGCCGCCGCGGCcGUCUCgGguGCCu -3'
miRNA:   3'- -CUGGCGGCGUCGaCAGAGgUguCGGc -5'
30174 5' -60.5 NC_006273.1 + 45408 0.8 0.15971
Target:  5'- uGCCGCCuGCAGCccaGUCUCCGCgAGCCGc -3'
miRNA:   3'- cUGGCGG-CGUCGa--CAGAGGUG-UCGGC- -5'
30174 5' -60.5 NC_006273.1 + 200750 0.79 0.198042
Target:  5'- -uUCGCCGCAGCUGUCuggUCCAuuCAGCCu -3'
miRNA:   3'- cuGGCGGCGUCGACAG---AGGU--GUCGGc -5'
30174 5' -60.5 NC_006273.1 + 227731 0.78 0.212503
Target:  5'- cGGCCGacaaaUCGCAGCUGUCUUCGCcGCCGc -3'
miRNA:   3'- -CUGGC-----GGCGUCGACAGAGGUGuCGGC- -5'
30174 5' -60.5 NC_006273.1 + 189509 0.77 0.254963
Target:  5'- cGGCCGCCGC-GCUGUgugagagUUCCAgGGCCGc -3'
miRNA:   3'- -CUGGCGGCGuCGACA-------GAGGUgUCGGC- -5'
30174 5' -60.5 NC_006273.1 + 198100 0.76 0.292326
Target:  5'- cGGCCGUCGCaagGGCUG-CUCgGCGGCCa -3'
miRNA:   3'- -CUGGCGGCG---UCGACaGAGgUGUCGGc -5'
30174 5' -60.5 NC_006273.1 + 118421 0.75 0.33312
Target:  5'- aGCCGCCGCAGCU-UC-CCAgAGCCc -3'
miRNA:   3'- cUGGCGGCGUCGAcAGaGGUgUCGGc -5'
30174 5' -60.5 NC_006273.1 + 90626 0.75 0.340311
Target:  5'- cGGCCGCCGCGuCgUGcCUCCGCAGCaCGu -3'
miRNA:   3'- -CUGGCGGCGUcG-ACaGAGGUGUCG-GC- -5'
30174 5' -60.5 NC_006273.1 + 74792 0.75 0.340311
Target:  5'- cACCGCCGCcGUUGUCUCC--GGCUGg -3'
miRNA:   3'- cUGGCGGCGuCGACAGAGGugUCGGC- -5'
30174 5' -60.5 NC_006273.1 + 233212 0.74 0.347615
Target:  5'- cGCCGCCGCuGCUGcCgcugCCGCcGCCGu -3'
miRNA:   3'- cUGGCGGCGuCGACaGa---GGUGuCGGC- -5'
30174 5' -60.5 NC_006273.1 + 38319 0.74 0.347615
Target:  5'- cGCCGCCGCuGCUGcCgcugCCGCcGCCGu -3'
miRNA:   3'- cUGGCGGCGuCGACaGa---GGUGuCGGC- -5'
30174 5' -60.5 NC_006273.1 + 161688 0.74 0.35503
Target:  5'- cGGCUGCgGCGGCacucgCUCCACGGCCu -3'
miRNA:   3'- -CUGGCGgCGUCGaca--GAGGUGUCGGc -5'
30174 5' -60.5 NC_006273.1 + 78098 0.74 0.35503
Target:  5'- cACCGCCGCcGCUGUUUCUcaACAGCa- -3'
miRNA:   3'- cUGGCGGCGuCGACAGAGG--UGUCGgc -5'
30174 5' -60.5 NC_006273.1 + 233682 0.73 0.39135
Target:  5'- cACCGCCGCGGCgGaUUUCCGCgcgggggacgggguAGCCGa -3'
miRNA:   3'- cUGGCGGCGUCGaC-AGAGGUG--------------UCGGC- -5'
30174 5' -60.5 NC_006273.1 + 68180 0.73 0.393749
Target:  5'- cGGCCGCUGaC-GCUGUuuacgccggcCUCCGCGGCCGc -3'
miRNA:   3'- -CUGGCGGC-GuCGACA----------GAGGUGUCGGC- -5'
30174 5' -60.5 NC_006273.1 + 72391 0.73 0.409985
Target:  5'- uACCGCCGCAGCUGcCgCCGuCgAGCCu -3'
miRNA:   3'- cUGGCGGCGUCGACaGaGGU-G-UCGGc -5'
30174 5' -60.5 NC_006273.1 + 148842 0.73 0.418257
Target:  5'- cGAUCGUCGCuGGCUGUUgccgCCGCuGCCGc -3'
miRNA:   3'- -CUGGCGGCG-UCGACAGa---GGUGuCGGC- -5'
30174 5' -60.5 NC_006273.1 + 73170 0.73 0.425789
Target:  5'- uACCGCCGCuuccuccGGCUGcagCgcaCCGCGGCCGa -3'
miRNA:   3'- cUGGCGGCG-------UCGACa--Ga--GGUGUCGGC- -5'
30174 5' -60.5 NC_006273.1 + 134034 0.73 0.426631
Target:  5'- cGGCCGCCGCcuGGUUGguguugccCUCCACGGCg- -3'
miRNA:   3'- -CUGGCGGCG--UCGACa-------GAGGUGUCGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.