miRNA display CGI


Results 21 - 40 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30174 5' -60.5 NC_006273.1 + 65521 0.66 0.803992
Target:  5'- aGAuCCGuuGCGGUUGUgUCCAaaagcuauaaaucaUAGCCa -3'
miRNA:   3'- -CU-GGCggCGUCGACAgAGGU--------------GUCGGc -5'
30174 5' -60.5 NC_006273.1 + 147866 0.66 0.798053
Target:  5'- aGACCGCCGCcgcGCUGgcaaaCUCCgACAuucgcGUCGg -3'
miRNA:   3'- -CUGGCGGCGu--CGACa----GAGG-UGU-----CGGC- -5'
30174 5' -60.5 NC_006273.1 + 17818 0.66 0.798053
Target:  5'- aGCCGCCGCcgaAGcCUGgggcaccuaUCUCCgACAGCgCGa -3'
miRNA:   3'- cUGGCGGCG---UC-GAC---------AGAGG-UGUCG-GC- -5'
30174 5' -60.5 NC_006273.1 + 30660 0.66 0.798053
Target:  5'- cGACgCGCCggGCGGCU-UC-CUGCGGCCGg -3'
miRNA:   3'- -CUG-GCGG--CGUCGAcAGaGGUGUCGGC- -5'
30174 5' -60.5 NC_006273.1 + 230528 0.66 0.798053
Target:  5'- gGAUUGCCGCuguGCUGUCagCCGCguuGGuCCGc -3'
miRNA:   3'- -CUGGCGGCGu--CGACAGa-GGUG---UC-GGC- -5'
30174 5' -60.5 NC_006273.1 + 37283 0.66 0.798053
Target:  5'- uGGCCGCCgaGCAGCccuugCgACGGCCGg -3'
miRNA:   3'- -CUGGCGG--CGUCGacagaGgUGUCGGC- -5'
30174 5' -60.5 NC_006273.1 + 140909 0.66 0.798053
Target:  5'- gGACC-CCGguGCggggGUC-CCAgccCGGCCGg -3'
miRNA:   3'- -CUGGcGGCguCGa---CAGaGGU---GUCGGC- -5'
30174 5' -60.5 NC_006273.1 + 44786 0.66 0.79032
Target:  5'- aGAUCGCCGCGGCcgaugggcgccggcgGacgugaCUCgGCAGCCGc -3'
miRNA:   3'- -CUGGCGGCGUCGa--------------Ca-----GAGgUGUCGGC- -5'
30174 5' -60.5 NC_006273.1 + 68062 0.66 0.789454
Target:  5'- cGCCGCCGUGGCcg---CCGCuGCCGc -3'
miRNA:   3'- cUGGCGGCGUCGacagaGGUGuCGGC- -5'
30174 5' -60.5 NC_006273.1 + 14110 0.66 0.789454
Target:  5'- gGACCGCCG--GCUGUUUCUGCGcaCCGg -3'
miRNA:   3'- -CUGGCGGCguCGACAGAGGUGUc-GGC- -5'
30174 5' -60.5 NC_006273.1 + 154997 0.66 0.789454
Target:  5'- cGCCGCUGCcGCcg---CCACGGCCGc -3'
miRNA:   3'- cUGGCGGCGuCGacagaGGUGUCGGC- -5'
30174 5' -60.5 NC_006273.1 + 18494 0.66 0.789454
Target:  5'- aGCCGuuGCucauGCUGggCUCCAUcgagGGCCu -3'
miRNA:   3'- cUGGCggCGu---CGACa-GAGGUG----UCGGc -5'
30174 5' -60.5 NC_006273.1 + 179242 0.66 0.789454
Target:  5'- cGACCuCCGCGucggucGCcGcCUCCGCGGCCc -3'
miRNA:   3'- -CUGGcGGCGU------CGaCaGAGGUGUCGGc -5'
30174 5' -60.5 NC_006273.1 + 44984 0.66 0.784233
Target:  5'- gGAUCGUCgGCGGaUGUCUCUucgggacccggcaucGCAGCCGu -3'
miRNA:   3'- -CUGGCGG-CGUCgACAGAGG---------------UGUCGGC- -5'
30174 5' -60.5 NC_006273.1 + 196693 0.66 0.780728
Target:  5'- aGCgGCCGUAGUUGUCgcggUCCGC-GUCGc -3'
miRNA:   3'- cUGgCGGCGUCGACAG----AGGUGuCGGC- -5'
30174 5' -60.5 NC_006273.1 + 23292 0.66 0.780728
Target:  5'- cACCGCCGUca-UGUCUCCGaacucagaGGCCa -3'
miRNA:   3'- cUGGCGGCGucgACAGAGGUg-------UCGGc -5'
30174 5' -60.5 NC_006273.1 + 87532 0.66 0.780728
Target:  5'- cGCgGCgGCGGUcucUGUCUCUGguGCCGc -3'
miRNA:   3'- cUGgCGgCGUCG---ACAGAGGUguCGGC- -5'
30174 5' -60.5 NC_006273.1 + 184984 0.66 0.780728
Target:  5'- aACCGCCGUucGGCUcugCUCCG-AGCCa -3'
miRNA:   3'- cUGGCGGCG--UCGAca-GAGGUgUCGGc -5'
30174 5' -60.5 NC_006273.1 + 152464 0.67 0.771881
Target:  5'- uGCCG-CGCAGCUG-CgCCucCAGCCGc -3'
miRNA:   3'- cUGGCgGCGUCGACaGaGGu-GUCGGC- -5'
30174 5' -60.5 NC_006273.1 + 143759 0.67 0.771881
Target:  5'- gGAUCGuuGCGGUUGUCgccuuugguggUCCGCAaCCGc -3'
miRNA:   3'- -CUGGCggCGUCGACAG-----------AGGUGUcGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.