miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30174 5' -60.5 NC_006273.1 + 647 0.73 0.435102
Target:  5'- cGCUGCCGguGCgUGUggCUCCACAGCa- -3'
miRNA:   3'- cUGGCGGCguCG-ACA--GAGGUGUCGgc -5'
30174 5' -60.5 NC_006273.1 + 673 0.7 0.552941
Target:  5'- aGugCGUCGuCGGCUGccgggugguUUUCCACGGCCu -3'
miRNA:   3'- -CugGCGGC-GUCGAC---------AGAGGUGUCGGc -5'
30174 5' -60.5 NC_006273.1 + 1715 0.67 0.73545
Target:  5'- -uCCGCCGCGGCgGUggcgaCugGGCCGa -3'
miRNA:   3'- cuGGCGGCGUCGaCAgag--GugUCGGC- -5'
30174 5' -60.5 NC_006273.1 + 2054 0.68 0.668881
Target:  5'- uGGCaggaGCCGUggggucuGCUGUgacuauacCUCCGCAGCCGu -3'
miRNA:   3'- -CUGg---CGGCGu------CGACA--------GAGGUGUCGGC- -5'
30174 5' -60.5 NC_006273.1 + 5834 0.71 0.524667
Target:  5'- aACCGCCGCAuCUGUCgccgCCaauugGCGGCCc -3'
miRNA:   3'- cUGGCGGCGUcGACAGa---GG-----UGUCGGc -5'
30174 5' -60.5 NC_006273.1 + 8038 0.69 0.649505
Target:  5'- --aCGagaCGCGGCgacgccUCUCCACGGCCGa -3'
miRNA:   3'- cugGCg--GCGUCGac----AGAGGUGUCGGC- -5'
30174 5' -60.5 NC_006273.1 + 12553 0.68 0.697724
Target:  5'- uGACgCGuCCGUuGCUG-CUCUGCGGCCa -3'
miRNA:   3'- -CUG-GC-GGCGuCGACaGAGGUGUCGGc -5'
30174 5' -60.5 NC_006273.1 + 14110 0.66 0.789454
Target:  5'- gGACCGCCG--GCUGUUUCUGCGcaCCGg -3'
miRNA:   3'- -CUGGCGGCguCGACAGAGGUGUc-GGC- -5'
30174 5' -60.5 NC_006273.1 + 17168 0.66 0.806516
Target:  5'- cGACgGCCGCGccauGCcgGUCgUCCGCcgucGGCCGc -3'
miRNA:   3'- -CUGgCGGCGU----CGa-CAG-AGGUG----UCGGC- -5'
30174 5' -60.5 NC_006273.1 + 17818 0.66 0.798053
Target:  5'- aGCCGCCGCcgaAGcCUGgggcaccuaUCUCCgACAGCgCGa -3'
miRNA:   3'- cUGGCGGCG---UC-GAC---------AGAGG-UGUCG-GC- -5'
30174 5' -60.5 NC_006273.1 + 18494 0.66 0.789454
Target:  5'- aGCCGuuGCucauGCUGggCUCCAUcgagGGCCu -3'
miRNA:   3'- cUGGCggCGu---CGACa-GAGGUG----UCGGc -5'
30174 5' -60.5 NC_006273.1 + 19894 0.66 0.816484
Target:  5'- cGACCGCCGCuuuggucuggaucGCUcccgcauuugcccGUCUacgaugugcguuccCCGCGGCCGu -3'
miRNA:   3'- -CUGGCGGCGu------------CGA-------------CAGA--------------GGUGUCGGC- -5'
30174 5' -60.5 NC_006273.1 + 20378 0.67 0.771881
Target:  5'- cGACgGUCGCuGCgacgGUCgcugCCACAGCa- -3'
miRNA:   3'- -CUGgCGGCGuCGa---CAGa---GGUGUCGgc -5'
30174 5' -60.5 NC_006273.1 + 21220 0.71 0.543461
Target:  5'- cGGCUGCCGCcGCUGUggCUgCCGCuGCUGa -3'
miRNA:   3'- -CUGGCGGCGuCGACA--GA-GGUGuCGGC- -5'
30174 5' -60.5 NC_006273.1 + 23292 0.66 0.780728
Target:  5'- cACCGCCGUca-UGUCUCCGaacucagaGGCCa -3'
miRNA:   3'- cUGGCGGCGucgACAGAGGUg-------UCGGc -5'
30174 5' -60.5 NC_006273.1 + 24207 0.72 0.478859
Target:  5'- -cCCGCCGCgccGGCcGUCUCCACcaaucaAGCCu -3'
miRNA:   3'- cuGGCGGCG---UCGaCAGAGGUG------UCGGc -5'
30174 5' -60.5 NC_006273.1 + 27175 0.67 0.729861
Target:  5'- cGCCGCaaugggcuucccuccUGCAGCUG-CaCCACGGCCu -3'
miRNA:   3'- cUGGCG---------------GCGUCGACaGaGGUGUCGGc -5'
30174 5' -60.5 NC_006273.1 + 30660 0.66 0.798053
Target:  5'- cGACgCGCCggGCGGCU-UC-CUGCGGCCGg -3'
miRNA:   3'- -CUG-GCGG--CGUCGAcAGaGGUGUCGGC- -5'
30174 5' -60.5 NC_006273.1 + 33136 0.68 0.668881
Target:  5'- cGCCGCCGCGGCUucauguggcGUgacCUCCGaccucgugaGGCCGa -3'
miRNA:   3'- cUGGCGGCGUCGA---------CA---GAGGUg--------UCGGC- -5'
30174 5' -60.5 NC_006273.1 + 37283 0.66 0.798053
Target:  5'- uGGCCGCCgaGCAGCccuugCgACGGCCGg -3'
miRNA:   3'- -CUGGCGG--CGUCGacagaGgUGUCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.