miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30174 5' -60.5 NC_006273.1 + 113015 0.7 0.56247
Target:  5'- aGCUGCCuCAGCUGUUaCCGCgucuGGCCGa -3'
miRNA:   3'- cUGGCGGcGUCGACAGaGGUG----UCGGC- -5'
30174 5' -60.5 NC_006273.1 + 198254 0.72 0.461088
Target:  5'- cACgGCCGcCAGCac-CUCCGCGGCCGa -3'
miRNA:   3'- cUGgCGGC-GUCGacaGAGGUGUCGGC- -5'
30174 5' -60.5 NC_006273.1 + 163599 0.72 0.473491
Target:  5'- cACCGCCGCGGCUGccaguaacucuUCcucgucuucuucggcUCCACuGCCGc -3'
miRNA:   3'- cUGGCGGCGUCGAC-----------AG---------------AGGUGuCGGC- -5'
30174 5' -60.5 NC_006273.1 + 72572 0.71 0.506125
Target:  5'- aGGCC-CCGCAGCUG-CggcgaCCGCGGCUGc -3'
miRNA:   3'- -CUGGcGGCGUCGACaGa----GGUGUCGGC- -5'
30174 5' -60.5 NC_006273.1 + 142072 0.71 0.534034
Target:  5'- cGCCGCCaGCGGCgacgGUUaCCACGGCUu -3'
miRNA:   3'- cUGGCGG-CGUCGa---CAGaGGUGUCGGc -5'
30174 5' -60.5 NC_006273.1 + 113645 0.71 0.543461
Target:  5'- cGCUGUCGCAGCUcUUUCC-CGGCCu -3'
miRNA:   3'- cUGGCGGCGUCGAcAGAGGuGUCGGc -5'
30174 5' -60.5 NC_006273.1 + 21220 0.71 0.543461
Target:  5'- cGGCUGCCGCcGCUGUggCUgCCGCuGCUGa -3'
miRNA:   3'- -CUGGCGGCGuCGACA--GA-GGUGuCGGC- -5'
30174 5' -60.5 NC_006273.1 + 195566 0.7 0.552941
Target:  5'- aGugCGUCGuCGGCUGccgggugguUUUCCACGGCCu -3'
miRNA:   3'- -CugGCGGC-GUCGAC---------AGAGGUGUCGGc -5'
30174 5' -60.5 NC_006273.1 + 189775 0.7 0.56247
Target:  5'- uGCUGCUGCuGUUGUUguagagCCGCGGCCa -3'
miRNA:   3'- cUGGCGGCGuCGACAGa-----GGUGUCGGc -5'
30174 5' -60.5 NC_006273.1 + 37741 0.72 0.443671
Target:  5'- aACCGaCGCAGC-GUCUCCACGuGCUGc -3'
miRNA:   3'- cUGGCgGCGUCGaCAGAGGUGU-CGGC- -5'
30174 5' -60.5 NC_006273.1 + 647 0.73 0.435102
Target:  5'- cGCUGCCGguGCgUGUggCUCCACAGCa- -3'
miRNA:   3'- cUGGCGGCguCG-ACA--GAGGUGUCGgc -5'
30174 5' -60.5 NC_006273.1 + 134034 0.73 0.426631
Target:  5'- cGGCCGCCGCcuGGUUGguguugccCUCCACGGCg- -3'
miRNA:   3'- -CUGGCGGCG--UCGACa-------GAGGUGUCGgc -5'
30174 5' -60.5 NC_006273.1 + 45408 0.8 0.15971
Target:  5'- uGCCGCCuGCAGCccaGUCUCCGCgAGCCGc -3'
miRNA:   3'- cUGGCGG-CGUCGa--CAGAGGUG-UCGGC- -5'
30174 5' -60.5 NC_006273.1 + 118421 0.75 0.33312
Target:  5'- aGCCGCCGCAGCU-UC-CCAgAGCCc -3'
miRNA:   3'- cUGGCGGCGUCGAcAGaGGUgUCGGc -5'
30174 5' -60.5 NC_006273.1 + 233212 0.74 0.347615
Target:  5'- cGCCGCCGCuGCUGcCgcugCCGCcGCCGu -3'
miRNA:   3'- cUGGCGGCGuCGACaGa---GGUGuCGGC- -5'
30174 5' -60.5 NC_006273.1 + 78098 0.74 0.35503
Target:  5'- cACCGCCGCcGCUGUUUCUcaACAGCa- -3'
miRNA:   3'- cUGGCGGCGuCGACAGAGG--UGUCGgc -5'
30174 5' -60.5 NC_006273.1 + 161688 0.74 0.35503
Target:  5'- cGGCUGCgGCGGCacucgCUCCACGGCCu -3'
miRNA:   3'- -CUGGCGgCGUCGaca--GAGGUGUCGGc -5'
30174 5' -60.5 NC_006273.1 + 72391 0.73 0.409985
Target:  5'- uACCGCCGCAGCUGcCgCCGuCgAGCCu -3'
miRNA:   3'- cUGGCGGCGUCGACaGaGGU-G-UCGGc -5'
30174 5' -60.5 NC_006273.1 + 148842 0.73 0.418257
Target:  5'- cGAUCGUCGCuGGCUGUUgccgCCGCuGCCGc -3'
miRNA:   3'- -CUGGCGGCG-UCGACAGa---GGUGuCGGC- -5'
30174 5' -60.5 NC_006273.1 + 73170 0.73 0.425789
Target:  5'- uACCGCCGCuuccuccGGCUGcagCgcaCCGCGGCCGa -3'
miRNA:   3'- cUGGCGGCG-------UCGACa--Ga--GGUGUCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.