miRNA display CGI


Results 1 - 17 of 17 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30175 3' -53.8 NC_006273.1 + 198128 0.66 0.987352
Target:  5'- aCGgCGUCUUCCUCCUCgUCGucGccgccGUCGc -3'
miRNA:   3'- -GCaGCAGAAGGAGGAG-AGCcuC-----UAGC- -5'
30175 3' -53.8 NC_006273.1 + 89697 0.67 0.985626
Target:  5'- cCGUCGUCaucgUCCUCCcCUUcguccgaGGAGGaagUCGg -3'
miRNA:   3'- -GCAGCAGa---AGGAGGaGAG-------CCUCU---AGC- -5'
30175 3' -53.8 NC_006273.1 + 215901 0.67 0.984084
Target:  5'- cCGUCGUCUcCCaUCUggucgggUUCGGGGAUgGg -3'
miRNA:   3'- -GCAGCAGAaGG-AGGa------GAGCCUCUAgC- -5'
30175 3' -53.8 NC_006273.1 + 226311 0.67 0.98164
Target:  5'- aCGUCGUCguccucgUCCUCUUCgucgucugugcccgUCGGuucGAUCa -3'
miRNA:   3'- -GCAGCAGa------AGGAGGAG--------------AGCCu--CUAGc -5'
30175 3' -53.8 NC_006273.1 + 202220 0.67 0.980212
Target:  5'- aCGcCGUUUUCggCCUCacgaggUCGGAGGUCa -3'
miRNA:   3'- -GCaGCAGAAGgaGGAG------AGCCUCUAGc -5'
30175 3' -53.8 NC_006273.1 + 119069 0.68 0.973147
Target:  5'- uCGUCGUCcucuuccucuucUUCCUCCUCuuccUCGGuGggUGg -3'
miRNA:   3'- -GCAGCAG------------AAGGAGGAG----AGCCuCuaGC- -5'
30175 3' -53.8 NC_006273.1 + 99333 0.69 0.957592
Target:  5'- gCGUCGUCcUCauCUCCgCUCGGAacgcggcccgcgGAUCGg -3'
miRNA:   3'- -GCAGCAGaAG--GAGGaGAGCCU------------CUAGC- -5'
30175 3' -53.8 NC_006273.1 + 125335 0.69 0.945766
Target:  5'- gGUCGUCgccgUCCUCCUCacCGGAcGGccUCa -3'
miRNA:   3'- gCAGCAGa---AGGAGGAGa-GCCU-CU--AGc -5'
30175 3' -53.8 NC_006273.1 + 159598 0.7 0.926904
Target:  5'- -aUCGauUCUUCUUUUUCUCGGGGGUUGc -3'
miRNA:   3'- gcAGC--AGAAGGAGGAGAGCCUCUAGC- -5'
30175 3' -53.8 NC_006273.1 + 117349 0.71 0.904449
Target:  5'- cCGUCG-CUUUCUCC-CUCGGAGc-CGg -3'
miRNA:   3'- -GCAGCaGAAGGAGGaGAGCCUCuaGC- -5'
30175 3' -53.8 NC_006273.1 + 218249 0.72 0.864232
Target:  5'- -uUCGUCUUCCUCUUCUCcgucucccagGGAacgcGGUCGa -3'
miRNA:   3'- gcAGCAGAAGGAGGAGAG----------CCU----CUAGC- -5'
30175 3' -53.8 NC_006273.1 + 63930 0.72 0.863499
Target:  5'- -uUCGUCUUCCUCCUCcugcaguUCGGcuucGGAcUCGg -3'
miRNA:   3'- gcAGCAGAAGGAGGAG-------AGCC----UCU-AGC- -5'
30175 3' -53.8 NC_006273.1 + 146417 0.72 0.8492
Target:  5'- uCGUCGUCcUCUUCUUCgCGGAGG-CGa -3'
miRNA:   3'- -GCAGCAGaAGGAGGAGaGCCUCUaGC- -5'
30175 3' -53.8 NC_006273.1 + 189457 0.73 0.833427
Target:  5'- uCGUCGUCgUCCUCCUCUCccucGUCGu -3'
miRNA:   3'- -GCAGCAGaAGGAGGAGAGccucUAGC- -5'
30175 3' -53.8 NC_006273.1 + 41145 0.75 0.734054
Target:  5'- uCGUCGUCUUCCUCCUCgcugucuucgacCGGuGAcUCu -3'
miRNA:   3'- -GCAGCAGAAGGAGGAGa-----------GCCuCU-AGc -5'
30175 3' -53.8 NC_006273.1 + 74910 0.78 0.568871
Target:  5'- aCGUCGUUUUCCUCCUCUCcGucGUCa -3'
miRNA:   3'- -GCAGCAGAAGGAGGAGAGcCucUAGc -5'
30175 3' -53.8 NC_006273.1 + 163758 1.08 0.009979
Target:  5'- uCGUCGUCUUCCUCCUCUCGGAGAUCGc -3'
miRNA:   3'- -GCAGCAGAAGGAGGAGAGCCUCUAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.