Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30175 | 3' | -53.8 | NC_006273.1 | + | 163758 | 1.08 | 0.009979 |
Target: 5'- uCGUCGUCUUCCUCCUCUCGGAGAUCGc -3' miRNA: 3'- -GCAGCAGAAGGAGGAGAGCCUCUAGC- -5' |
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30175 | 3' | -53.8 | NC_006273.1 | + | 74910 | 0.78 | 0.568871 |
Target: 5'- aCGUCGUUUUCCUCCUCUCcGucGUCa -3' miRNA: 3'- -GCAGCAGAAGGAGGAGAGcCucUAGc -5' |
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30175 | 3' | -53.8 | NC_006273.1 | + | 41145 | 0.75 | 0.734054 |
Target: 5'- uCGUCGUCUUCCUCCUCgcugucuucgacCGGuGAcUCu -3' miRNA: 3'- -GCAGCAGAAGGAGGAGa-----------GCCuCU-AGc -5' |
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30175 | 3' | -53.8 | NC_006273.1 | + | 189457 | 0.73 | 0.833427 |
Target: 5'- uCGUCGUCgUCCUCCUCUCccucGUCGu -3' miRNA: 3'- -GCAGCAGaAGGAGGAGAGccucUAGC- -5' |
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30175 | 3' | -53.8 | NC_006273.1 | + | 146417 | 0.72 | 0.8492 |
Target: 5'- uCGUCGUCcUCUUCUUCgCGGAGG-CGa -3' miRNA: 3'- -GCAGCAGaAGGAGGAGaGCCUCUaGC- -5' |
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30175 | 3' | -53.8 | NC_006273.1 | + | 63930 | 0.72 | 0.863499 |
Target: 5'- -uUCGUCUUCCUCCUCcugcaguUCGGcuucGGAcUCGg -3' miRNA: 3'- gcAGCAGAAGGAGGAG-------AGCC----UCU-AGC- -5' |
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30175 | 3' | -53.8 | NC_006273.1 | + | 218249 | 0.72 | 0.864232 |
Target: 5'- -uUCGUCUUCCUCUUCUCcgucucccagGGAacgcGGUCGa -3' miRNA: 3'- gcAGCAGAAGGAGGAGAG----------CCU----CUAGC- -5' |
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30175 | 3' | -53.8 | NC_006273.1 | + | 117349 | 0.71 | 0.904449 |
Target: 5'- cCGUCG-CUUUCUCC-CUCGGAGc-CGg -3' miRNA: 3'- -GCAGCaGAAGGAGGaGAGCCUCuaGC- -5' |
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30175 | 3' | -53.8 | NC_006273.1 | + | 159598 | 0.7 | 0.926904 |
Target: 5'- -aUCGauUCUUCUUUUUCUCGGGGGUUGc -3' miRNA: 3'- gcAGC--AGAAGGAGGAGAGCCUCUAGC- -5' |
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30175 | 3' | -53.8 | NC_006273.1 | + | 125335 | 0.69 | 0.945766 |
Target: 5'- gGUCGUCgccgUCCUCCUCacCGGAcGGccUCa -3' miRNA: 3'- gCAGCAGa---AGGAGGAGa-GCCU-CU--AGc -5' |
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30175 | 3' | -53.8 | NC_006273.1 | + | 99333 | 0.69 | 0.957592 |
Target: 5'- gCGUCGUCcUCauCUCCgCUCGGAacgcggcccgcgGAUCGg -3' miRNA: 3'- -GCAGCAGaAG--GAGGaGAGCCU------------CUAGC- -5' |
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30175 | 3' | -53.8 | NC_006273.1 | + | 119069 | 0.68 | 0.973147 |
Target: 5'- uCGUCGUCcucuuccucuucUUCCUCCUCuuccUCGGuGggUGg -3' miRNA: 3'- -GCAGCAG------------AAGGAGGAG----AGCCuCuaGC- -5' |
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30175 | 3' | -53.8 | NC_006273.1 | + | 202220 | 0.67 | 0.980212 |
Target: 5'- aCGcCGUUUUCggCCUCacgaggUCGGAGGUCa -3' miRNA: 3'- -GCaGCAGAAGgaGGAG------AGCCUCUAGc -5' |
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30175 | 3' | -53.8 | NC_006273.1 | + | 226311 | 0.67 | 0.98164 |
Target: 5'- aCGUCGUCguccucgUCCUCUUCgucgucugugcccgUCGGuucGAUCa -3' miRNA: 3'- -GCAGCAGa------AGGAGGAG--------------AGCCu--CUAGc -5' |
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30175 | 3' | -53.8 | NC_006273.1 | + | 215901 | 0.67 | 0.984084 |
Target: 5'- cCGUCGUCUcCCaUCUggucgggUUCGGGGAUgGg -3' miRNA: 3'- -GCAGCAGAaGG-AGGa------GAGCCUCUAgC- -5' |
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30175 | 3' | -53.8 | NC_006273.1 | + | 89697 | 0.67 | 0.985626 |
Target: 5'- cCGUCGUCaucgUCCUCCcCUUcguccgaGGAGGaagUCGg -3' miRNA: 3'- -GCAGCAGa---AGGAGGaGAG-------CCUCU---AGC- -5' |
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30175 | 3' | -53.8 | NC_006273.1 | + | 198128 | 0.66 | 0.987352 |
Target: 5'- aCGgCGUCUUCCUCCUCgUCGucGccgccGUCGc -3' miRNA: 3'- -GCaGCAGAAGGAGGAG-AGCcuC-----UAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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