Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30175 | 5' | -54.9 | NC_006273.1 | + | 188417 | 0.66 | 0.966138 |
Target: 5'- -uCGACCGUgGUGaAGGGCGguGGGugGAa -3' miRNA: 3'- uuGUUGGCGgUAC-UCCUGC--UCCugUU- -5' |
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30175 | 5' | -54.9 | NC_006273.1 | + | 51494 | 0.66 | 0.966138 |
Target: 5'- cACGACCGgCGgcaacgGcGGcGACGAGGACAAc -3' miRNA: 3'- uUGUUGGCgGUa-----C-UC-CUGCUCCUGUU- -5' |
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30175 | 5' | -54.9 | NC_006273.1 | + | 105330 | 0.66 | 0.966138 |
Target: 5'- cAGCGGCUGCUGgaaGAGGgcgACGAGGAgGAu -3' miRNA: 3'- -UUGUUGGCGGUa--CUCC---UGCUCCUgUU- -5' |
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30175 | 5' | -54.9 | NC_006273.1 | + | 9068 | 0.66 | 0.959335 |
Target: 5'- cACAGaCGaCgAaGAGGACGAGGACGAc -3' miRNA: 3'- uUGUUgGC-GgUaCUCCUGCUCCUGUU- -5' |
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30175 | 5' | -54.9 | NC_006273.1 | + | 194700 | 0.66 | 0.955604 |
Target: 5'- cACAGCaCGCCGcaaacgcgcUGAGGACGccGACGc -3' miRNA: 3'- uUGUUG-GCGGU---------ACUCCUGCucCUGUu -5' |
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30175 | 5' | -54.9 | NC_006273.1 | + | 104887 | 0.66 | 0.955604 |
Target: 5'- cGCGGCCGgCGgccGAGGugGAGuGCAAg -3' miRNA: 3'- uUGUUGGCgGUa--CUCCugCUCcUGUU- -5' |
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30175 | 5' | -54.9 | NC_006273.1 | + | 234638 | 0.66 | 0.955604 |
Target: 5'- cACAGCaCGCCGcaaacgcgcUGAGGACGccGACGc -3' miRNA: 3'- uUGUUG-GCGGU---------ACUCCUGCucCUGUu -5' |
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30175 | 5' | -54.9 | NC_006273.1 | + | 190140 | 0.66 | 0.955604 |
Target: 5'- gAGCAGCCGCC----GGGCGGcacGGGCAAg -3' miRNA: 3'- -UUGUUGGCGGuacuCCUGCU---CCUGUU- -5' |
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30175 | 5' | -54.9 | NC_006273.1 | + | 147030 | 0.66 | 0.955219 |
Target: 5'- uACGGCgGCCAUGAaGGCGAucaugcuGGGCAGc -3' miRNA: 3'- uUGUUGgCGGUACUcCUGCU-------CCUGUU- -5' |
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30175 | 5' | -54.9 | NC_006273.1 | + | 213595 | 0.67 | 0.94746 |
Target: 5'- cACAGCCGCCG-GAGaGACGcgccAGGAUc- -3' miRNA: 3'- uUGUUGGCGGUaCUC-CUGC----UCCUGuu -5' |
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30175 | 5' | -54.9 | NC_006273.1 | + | 197999 | 0.67 | 0.943041 |
Target: 5'- cGCGGCUGagCGUgugGAGGACGGGGugGAg -3' miRNA: 3'- uUGUUGGCg-GUA---CUCCUGCUCCugUU- -5' |
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30175 | 5' | -54.9 | NC_006273.1 | + | 36713 | 0.67 | 0.943041 |
Target: 5'- uAGCGGCCGCgAgcgGAGGcgcGCGAGcGGCGg -3' miRNA: 3'- -UUGUUGGCGgUa--CUCC---UGCUC-CUGUu -5' |
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30175 | 5' | -54.9 | NC_006273.1 | + | 189038 | 0.67 | 0.938386 |
Target: 5'- cGACAGCCGCgugGUGGGGGCccGGACc- -3' miRNA: 3'- -UUGUUGGCGg--UACUCCUGcuCCUGuu -5' |
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30175 | 5' | -54.9 | NC_006273.1 | + | 205523 | 0.67 | 0.928364 |
Target: 5'- --aGACCGCUGUGugccucaucucGGACGAGGGCu- -3' miRNA: 3'- uugUUGGCGGUACu----------CCUGCUCCUGuu -5' |
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30175 | 5' | -54.9 | NC_006273.1 | + | 142798 | 0.67 | 0.928364 |
Target: 5'- cAGCAGCCGCCGUcgcuGGugGGcacGGGCGu -3' miRNA: 3'- -UUGUUGGCGGUAcu--CCugCU---CCUGUu -5' |
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30175 | 5' | -54.9 | NC_006273.1 | + | 129638 | 0.67 | 0.928364 |
Target: 5'- uGCAACCucacccaagaGCUAUcGAcGGGCGAGGACGc -3' miRNA: 3'- uUGUUGG----------CGGUA-CU-CCUGCUCCUGUu -5' |
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30175 | 5' | -54.9 | NC_006273.1 | + | 73726 | 0.67 | 0.922996 |
Target: 5'- cGACcccGCCGCCAUGGGuGGCGGcGGCGg -3' miRNA: 3'- -UUGu--UGGCGGUACUC-CUGCUcCUGUu -5' |
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30175 | 5' | -54.9 | NC_006273.1 | + | 189726 | 0.68 | 0.917388 |
Target: 5'- uGCAACaaGCCgAUGAGGACGuGGcACAGu -3' miRNA: 3'- uUGUUGg-CGG-UACUCCUGCuCC-UGUU- -5' |
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30175 | 5' | -54.9 | NC_006273.1 | + | 31450 | 0.68 | 0.917388 |
Target: 5'- uGGCGaaGCCGCCAUGAGG-CGGuGGCu- -3' miRNA: 3'- -UUGU--UGGCGGUACUCCuGCUcCUGuu -5' |
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30175 | 5' | -54.9 | NC_006273.1 | + | 145623 | 0.68 | 0.911544 |
Target: 5'- gGGCGGCgGUCGUGGuGGugGGGGugGc -3' miRNA: 3'- -UUGUUGgCGGUACU-CCugCUCCugUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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