miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30175 5' -54.9 NC_006273.1 + 163793 1.03 0.010676
Target:  5'- aAACAACCGCCAUGAGGACGAGGACAAc -3'
miRNA:   3'- -UUGUUGGCGGUACUCCUGCUCCUGUU- -5'
30175 5' -54.9 NC_006273.1 + 41091 0.77 0.444343
Target:  5'- cGGgGACgGUgGUGAGGACGGGGACAGg -3'
miRNA:   3'- -UUgUUGgCGgUACUCCUGCUCCUGUU- -5'
30175 5' -54.9 NC_006273.1 + 1153 0.77 0.444343
Target:  5'- cGGgGACgGUgGUGAGGACGGGGACAGg -3'
miRNA:   3'- -UUgUUGgCGgUACUCCUGCUCCUGUU- -5'
30175 5' -54.9 NC_006273.1 + 135657 0.75 0.529814
Target:  5'- cGCGACCGCCucaaaaagcAGGugGAGGACAGu -3'
miRNA:   3'- uUGUUGGCGGuac------UCCugCUCCUGUU- -5'
30175 5' -54.9 NC_006273.1 + 72540 0.75 0.569744
Target:  5'- --aGACCGCg--GAGGAUGAGGACGAg -3'
miRNA:   3'- uugUUGGCGguaCUCCUGCUCCUGUU- -5'
30175 5' -54.9 NC_006273.1 + 163853 0.74 0.589996
Target:  5'- cAGCGGCCGCCGgcGAGGGCccucguuccucGAGGACGGa -3'
miRNA:   3'- -UUGUUGGCGGUa-CUCCUG-----------CUCCUGUU- -5'
30175 5' -54.9 NC_006273.1 + 145759 0.73 0.671635
Target:  5'- -uCGACC-CCGUGAcGGGCGAGGAUAc -3'
miRNA:   3'- uuGUUGGcGGUACU-CCUGCUCCUGUu -5'
30175 5' -54.9 NC_006273.1 + 190361 0.73 0.681781
Target:  5'- aGGCcGCCGCCGUGGGGGCcgcggaggGAGGAgAGg -3'
miRNA:   3'- -UUGuUGGCGGUACUCCUG--------CUCCUgUU- -5'
30175 5' -54.9 NC_006273.1 + 12186 0.72 0.701944
Target:  5'- --gGGCCGCgGuccucuucUGAGGACGAGGACu- -3'
miRNA:   3'- uugUUGGCGgU--------ACUCCUGCUCCUGuu -5'
30175 5' -54.9 NC_006273.1 + 84858 0.72 0.701944
Target:  5'- cGGCGGCCGUCA--GGGugGAGGGCu- -3'
miRNA:   3'- -UUGUUGGCGGUacUCCugCUCCUGuu -5'
30175 5' -54.9 NC_006273.1 + 134397 0.72 0.701944
Target:  5'- cGACGAacuggaCGCCAU--GGACGAGGACGAa -3'
miRNA:   3'- -UUGUUg-----GCGGUAcuCCUGCUCCUGUU- -5'
30175 5' -54.9 NC_006273.1 + 71627 0.72 0.721873
Target:  5'- gGGCAgGCCGUgGgggGAGGACGAGGAgGAc -3'
miRNA:   3'- -UUGU-UGGCGgUa--CUCCUGCUCCUgUU- -5'
30175 5' -54.9 NC_006273.1 + 149443 0.72 0.721873
Target:  5'- gGGCGACgGCCccGAGGGCGAGGuuAu -3'
miRNA:   3'- -UUGUUGgCGGuaCUCCUGCUCCugUu -5'
30175 5' -54.9 NC_006273.1 + 31525 0.72 0.741493
Target:  5'- cGGCAACCcCUAUGAGGACGAcGACu- -3'
miRNA:   3'- -UUGUUGGcGGUACUCCUGCUcCUGuu -5'
30175 5' -54.9 NC_006273.1 + 145886 0.71 0.760732
Target:  5'- gAGCAGCCGCgAcGAGGugGcGGGCGc -3'
miRNA:   3'- -UUGUUGGCGgUaCUCCugCuCCUGUu -5'
30175 5' -54.9 NC_006273.1 + 160531 0.71 0.770186
Target:  5'- cGCGACCGCUgGUGAucGACGAGGACGc -3'
miRNA:   3'- uUGUUGGCGG-UACUc-CUGCUCCUGUu -5'
30175 5' -54.9 NC_006273.1 + 101992 0.71 0.796874
Target:  5'- cAGCAGgCGCCGUGGGGcugaaagAgGAGGACGu -3'
miRNA:   3'- -UUGUUgGCGGUACUCC-------UgCUCCUGUu -5'
30175 5' -54.9 NC_006273.1 + 96605 0.71 0.797773
Target:  5'- gGACAGCCGCCG-GAGaagccGACGAGGGa-- -3'
miRNA:   3'- -UUGUUGGCGGUaCUC-----CUGCUCCUguu -5'
30175 5' -54.9 NC_006273.1 + 120294 0.7 0.810201
Target:  5'- cGCGGCCGCUuccGAcgagggucccucaccGGGCGAGGACGAu -3'
miRNA:   3'- uUGUUGGCGGua-CU---------------CCUGCUCCUGUU- -5'
30175 5' -54.9 NC_006273.1 + 21275 0.7 0.815433
Target:  5'- uGACAGCCGCCAguacGACGGGGAa-- -3'
miRNA:   3'- -UUGUUGGCGGUacucCUGCUCCUguu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.