miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30175 5' -54.9 NC_006273.1 + 21275 0.7 0.815433
Target:  5'- uGACAGCCGCCAguacGACGGGGAa-- -3'
miRNA:   3'- -UUGUUGGCGGUacucCUGCUCCUguu -5'
30175 5' -54.9 NC_006273.1 + 47442 0.7 0.829085
Target:  5'- gGACGcCCGCgAgcgcggcgaguucGGGGACGAGGACGAa -3'
miRNA:   3'- -UUGUuGGCGgUa------------CUCCUGCUCCUGUU- -5'
30175 5' -54.9 NC_006273.1 + 76040 0.7 0.840656
Target:  5'- aAACAgcGCCGCCGUgccuccuccaGAGGACGGuGACGAc -3'
miRNA:   3'- -UUGU--UGGCGGUA----------CUCCUGCUcCUGUU- -5'
30175 5' -54.9 NC_006273.1 + 169879 0.69 0.848695
Target:  5'- aGGCcGCCGCUAucgcUGAGGGgGAGGAgGAg -3'
miRNA:   3'- -UUGuUGGCGGU----ACUCCUgCUCCUgUU- -5'
30175 5' -54.9 NC_006273.1 + 99613 0.69 0.864179
Target:  5'- gGACuGCCGCCGUGAGaaGGCGAcGGCGu -3'
miRNA:   3'- -UUGuUGGCGGUACUC--CUGCUcCUGUu -5'
30175 5' -54.9 NC_006273.1 + 40532 0.69 0.878829
Target:  5'- cGCuACCGCuCAcGGGGAcCGAGGGCGGu -3'
miRNA:   3'- uUGuUGGCG-GUaCUCCU-GCUCCUGUU- -5'
30175 5' -54.9 NC_006273.1 + 104237 0.69 0.878829
Target:  5'- cGCAccucGCCGCCGUGuucGGGCGAGaGCAc -3'
miRNA:   3'- uUGU----UGGCGGUACu--CCUGCUCcUGUu -5'
30175 5' -54.9 NC_006273.1 + 173815 0.69 0.878829
Target:  5'- aAACGGCCGCgCGacccgGccGACGAGGACAAu -3'
miRNA:   3'- -UUGUUGGCG-GUa----CucCUGCUCCUGUU- -5'
30175 5' -54.9 NC_006273.1 + 41261 0.69 0.885827
Target:  5'- cGACGGCCuCCGaGGGGugGuGGACAc -3'
miRNA:   3'- -UUGUUGGcGGUaCUCCugCuCCUGUu -5'
30175 5' -54.9 NC_006273.1 + 94849 0.68 0.892601
Target:  5'- gGugGACgGUgGUGGGGACGGGcGACGc -3'
miRNA:   3'- -UugUUGgCGgUACUCCUGCUC-CUGUu -5'
30175 5' -54.9 NC_006273.1 + 147911 0.68 0.892601
Target:  5'- --gGGCCGCC-UGAGGAaGGGGAgGAg -3'
miRNA:   3'- uugUUGGCGGuACUCCUgCUCCUgUU- -5'
30175 5' -54.9 NC_006273.1 + 145623 0.68 0.911544
Target:  5'- gGGCGGCgGUCGUGGuGGugGGGGugGc -3'
miRNA:   3'- -UUGUUGgCGGUACU-CCugCUCCugUu -5'
30175 5' -54.9 NC_006273.1 + 189726 0.68 0.917388
Target:  5'- uGCAACaaGCCgAUGAGGACGuGGcACAGu -3'
miRNA:   3'- uUGUUGg-CGG-UACUCCUGCuCC-UGUU- -5'
30175 5' -54.9 NC_006273.1 + 31450 0.68 0.917388
Target:  5'- uGGCGaaGCCGCCAUGAGG-CGGuGGCu- -3'
miRNA:   3'- -UUGU--UGGCGGUACUCCuGCUcCUGuu -5'
30175 5' -54.9 NC_006273.1 + 73726 0.67 0.922996
Target:  5'- cGACcccGCCGCCAUGGGuGGCGGcGGCGg -3'
miRNA:   3'- -UUGu--UGGCGGUACUC-CUGCUcCUGUu -5'
30175 5' -54.9 NC_006273.1 + 205523 0.67 0.928364
Target:  5'- --aGACCGCUGUGugccucaucucGGACGAGGGCu- -3'
miRNA:   3'- uugUUGGCGGUACu----------CCUGCUCCUGuu -5'
30175 5' -54.9 NC_006273.1 + 142798 0.67 0.928364
Target:  5'- cAGCAGCCGCCGUcgcuGGugGGcacGGGCGu -3'
miRNA:   3'- -UUGUUGGCGGUAcu--CCugCU---CCUGUu -5'
30175 5' -54.9 NC_006273.1 + 129638 0.67 0.928364
Target:  5'- uGCAACCucacccaagaGCUAUcGAcGGGCGAGGACGc -3'
miRNA:   3'- uUGUUGG----------CGGUA-CU-CCUGCUCCUGUu -5'
30175 5' -54.9 NC_006273.1 + 189038 0.67 0.938386
Target:  5'- cGACAGCCGCgugGUGGGGGCccGGACc- -3'
miRNA:   3'- -UUGUUGGCGg--UACUCCUGcuCCUGuu -5'
30175 5' -54.9 NC_006273.1 + 36713 0.67 0.943041
Target:  5'- uAGCGGCCGCgAgcgGAGGcgcGCGAGcGGCGg -3'
miRNA:   3'- -UUGUUGGCGgUa--CUCC---UGCUC-CUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.