miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30175 5' -54.9 NC_006273.1 + 94849 0.68 0.892601
Target:  5'- gGugGACgGUgGUGGGGACGGGcGACGc -3'
miRNA:   3'- -UugUUGgCGgUACUCCUGCUC-CUGUu -5'
30175 5' -54.9 NC_006273.1 + 147911 0.68 0.892601
Target:  5'- --gGGCCGCC-UGAGGAaGGGGAgGAg -3'
miRNA:   3'- uugUUGGCGGuACUCCUgCUCCUgUU- -5'
30175 5' -54.9 NC_006273.1 + 41261 0.69 0.885827
Target:  5'- cGACGGCCuCCGaGGGGugGuGGACAc -3'
miRNA:   3'- -UUGUUGGcGGUaCUCCugCuCCUGUu -5'
30175 5' -54.9 NC_006273.1 + 104237 0.69 0.878829
Target:  5'- cGCAccucGCCGCCGUGuucGGGCGAGaGCAc -3'
miRNA:   3'- uUGU----UGGCGGUACu--CCUGCUCcUGUu -5'
30175 5' -54.9 NC_006273.1 + 40532 0.69 0.878829
Target:  5'- cGCuACCGCuCAcGGGGAcCGAGGGCGGu -3'
miRNA:   3'- uUGuUGGCG-GUaCUCCU-GCUCCUGUU- -5'
30175 5' -54.9 NC_006273.1 + 173815 0.69 0.878829
Target:  5'- aAACGGCCGCgCGacccgGccGACGAGGACAAu -3'
miRNA:   3'- -UUGUUGGCG-GUa----CucCUGCUCCUGUU- -5'
30175 5' -54.9 NC_006273.1 + 99613 0.69 0.864179
Target:  5'- gGACuGCCGCCGUGAGaaGGCGAcGGCGu -3'
miRNA:   3'- -UUGuUGGCGGUACUC--CUGCUcCUGUu -5'
30175 5' -54.9 NC_006273.1 + 169879 0.69 0.848695
Target:  5'- aGGCcGCCGCUAucgcUGAGGGgGAGGAgGAg -3'
miRNA:   3'- -UUGuUGGCGGU----ACUCCUgCUCCUgUU- -5'
30175 5' -54.9 NC_006273.1 + 76040 0.7 0.840656
Target:  5'- aAACAgcGCCGCCGUgccuccuccaGAGGACGGuGACGAc -3'
miRNA:   3'- -UUGU--UGGCGGUA----------CUCCUGCUcCUGUU- -5'
30175 5' -54.9 NC_006273.1 + 47442 0.7 0.829085
Target:  5'- gGACGcCCGCgAgcgcggcgaguucGGGGACGAGGACGAa -3'
miRNA:   3'- -UUGUuGGCGgUa------------CUCCUGCUCCUGUU- -5'
30175 5' -54.9 NC_006273.1 + 200563 0.7 0.815433
Target:  5'- cGACGACUGUCGUGAuGAUGAGGAg-- -3'
miRNA:   3'- -UUGUUGGCGGUACUcCUGCUCCUguu -5'
30175 5' -54.9 NC_006273.1 + 21275 0.7 0.815433
Target:  5'- uGACAGCCGCCAguacGACGGGGAa-- -3'
miRNA:   3'- -UUGUUGGCGGUacucCUGCUCCUguu -5'
30175 5' -54.9 NC_006273.1 + 120294 0.7 0.810201
Target:  5'- cGCGGCCGCUuccGAcgagggucccucaccGGGCGAGGACGAu -3'
miRNA:   3'- uUGUUGGCGGua-CU---------------CCUGCUCCUGUU- -5'
30175 5' -54.9 NC_006273.1 + 96605 0.71 0.797773
Target:  5'- gGACAGCCGCCG-GAGaagccGACGAGGGa-- -3'
miRNA:   3'- -UUGUUGGCGGUaCUC-----CUGCUCCUguu -5'
30175 5' -54.9 NC_006273.1 + 101992 0.71 0.796874
Target:  5'- cAGCAGgCGCCGUGGGGcugaaagAgGAGGACGu -3'
miRNA:   3'- -UUGUUgGCGGUACUCC-------UgCUCCUGUu -5'
30175 5' -54.9 NC_006273.1 + 160531 0.71 0.770186
Target:  5'- cGCGACCGCUgGUGAucGACGAGGACGc -3'
miRNA:   3'- uUGUUGGCGG-UACUc-CUGCUCCUGUu -5'
30175 5' -54.9 NC_006273.1 + 145886 0.71 0.760732
Target:  5'- gAGCAGCCGCgAcGAGGugGcGGGCGc -3'
miRNA:   3'- -UUGUUGGCGgUaCUCCugCuCCUGUu -5'
30175 5' -54.9 NC_006273.1 + 31525 0.72 0.741493
Target:  5'- cGGCAACCcCUAUGAGGACGAcGACu- -3'
miRNA:   3'- -UUGUUGGcGGUACUCCUGCUcCUGuu -5'
30175 5' -54.9 NC_006273.1 + 71627 0.72 0.721873
Target:  5'- gGGCAgGCCGUgGgggGAGGACGAGGAgGAc -3'
miRNA:   3'- -UUGU-UGGCGgUa--CUCCUGCUCCUgUU- -5'
30175 5' -54.9 NC_006273.1 + 149443 0.72 0.721873
Target:  5'- gGGCGACgGCCccGAGGGCGAGGuuAu -3'
miRNA:   3'- -UUGUUGgCGGuaCUCCUGCUCCugUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.