miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30175 5' -54.9 NC_006273.1 + 1153 0.77 0.444343
Target:  5'- cGGgGACgGUgGUGAGGACGGGGACAGg -3'
miRNA:   3'- -UUgUUGgCGgUACUCCUGCUCCUGUU- -5'
30175 5' -54.9 NC_006273.1 + 9068 0.66 0.959335
Target:  5'- cACAGaCGaCgAaGAGGACGAGGACGAc -3'
miRNA:   3'- uUGUUgGC-GgUaCUCCUGCUCCUGUU- -5'
30175 5' -54.9 NC_006273.1 + 12186 0.72 0.701944
Target:  5'- --gGGCCGCgGuccucuucUGAGGACGAGGACu- -3'
miRNA:   3'- uugUUGGCGgU--------ACUCCUGCUCCUGuu -5'
30175 5' -54.9 NC_006273.1 + 21275 0.7 0.815433
Target:  5'- uGACAGCCGCCAguacGACGGGGAa-- -3'
miRNA:   3'- -UUGUUGGCGGUacucCUGCUCCUguu -5'
30175 5' -54.9 NC_006273.1 + 31450 0.68 0.917388
Target:  5'- uGGCGaaGCCGCCAUGAGG-CGGuGGCu- -3'
miRNA:   3'- -UUGU--UGGCGGUACUCCuGCUcCUGuu -5'
30175 5' -54.9 NC_006273.1 + 31525 0.72 0.741493
Target:  5'- cGGCAACCcCUAUGAGGACGAcGACu- -3'
miRNA:   3'- -UUGUUGGcGGUACUCCUGCUcCUGuu -5'
30175 5' -54.9 NC_006273.1 + 36713 0.67 0.943041
Target:  5'- uAGCGGCCGCgAgcgGAGGcgcGCGAGcGGCGg -3'
miRNA:   3'- -UUGUUGGCGgUa--CUCC---UGCUC-CUGUu -5'
30175 5' -54.9 NC_006273.1 + 40532 0.69 0.878829
Target:  5'- cGCuACCGCuCAcGGGGAcCGAGGGCGGu -3'
miRNA:   3'- uUGuUGGCG-GUaCUCCU-GCUCCUGUU- -5'
30175 5' -54.9 NC_006273.1 + 41091 0.77 0.444343
Target:  5'- cGGgGACgGUgGUGAGGACGGGGACAGg -3'
miRNA:   3'- -UUgUUGgCGgUACUCCUGCUCCUGUU- -5'
30175 5' -54.9 NC_006273.1 + 41261 0.69 0.885827
Target:  5'- cGACGGCCuCCGaGGGGugGuGGACAc -3'
miRNA:   3'- -UUGUUGGcGGUaCUCCugCuCCUGUu -5'
30175 5' -54.9 NC_006273.1 + 47442 0.7 0.829085
Target:  5'- gGACGcCCGCgAgcgcggcgaguucGGGGACGAGGACGAa -3'
miRNA:   3'- -UUGUuGGCGgUa------------CUCCUGCUCCUGUU- -5'
30175 5' -54.9 NC_006273.1 + 51494 0.66 0.966138
Target:  5'- cACGACCGgCGgcaacgGcGGcGACGAGGACAAc -3'
miRNA:   3'- uUGUUGGCgGUa-----C-UC-CUGCUCCUGUU- -5'
30175 5' -54.9 NC_006273.1 + 71627 0.72 0.721873
Target:  5'- gGGCAgGCCGUgGgggGAGGACGAGGAgGAc -3'
miRNA:   3'- -UUGU-UGGCGgUa--CUCCUGCUCCUgUU- -5'
30175 5' -54.9 NC_006273.1 + 72540 0.75 0.569744
Target:  5'- --aGACCGCg--GAGGAUGAGGACGAg -3'
miRNA:   3'- uugUUGGCGguaCUCCUGCUCCUGUU- -5'
30175 5' -54.9 NC_006273.1 + 73726 0.67 0.922996
Target:  5'- cGACcccGCCGCCAUGGGuGGCGGcGGCGg -3'
miRNA:   3'- -UUGu--UGGCGGUACUC-CUGCUcCUGUu -5'
30175 5' -54.9 NC_006273.1 + 76040 0.7 0.840656
Target:  5'- aAACAgcGCCGCCGUgccuccuccaGAGGACGGuGACGAc -3'
miRNA:   3'- -UUGU--UGGCGGUA----------CUCCUGCUcCUGUU- -5'
30175 5' -54.9 NC_006273.1 + 84858 0.72 0.701944
Target:  5'- cGGCGGCCGUCA--GGGugGAGGGCu- -3'
miRNA:   3'- -UUGUUGGCGGUacUCCugCUCCUGuu -5'
30175 5' -54.9 NC_006273.1 + 94849 0.68 0.892601
Target:  5'- gGugGACgGUgGUGGGGACGGGcGACGc -3'
miRNA:   3'- -UugUUGgCGgUACUCCUGCUC-CUGUu -5'
30175 5' -54.9 NC_006273.1 + 96605 0.71 0.797773
Target:  5'- gGACAGCCGCCG-GAGaagccGACGAGGGa-- -3'
miRNA:   3'- -UUGUUGGCGGUaCUC-----CUGCUCCUguu -5'
30175 5' -54.9 NC_006273.1 + 99613 0.69 0.864179
Target:  5'- gGACuGCCGCCGUGAGaaGGCGAcGGCGu -3'
miRNA:   3'- -UUGuUGGCGGUACUC--CUGCUcCUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.