miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30175 5' -54.9 NC_006273.1 + 101992 0.71 0.796874
Target:  5'- cAGCAGgCGCCGUGGGGcugaaagAgGAGGACGu -3'
miRNA:   3'- -UUGUUgGCGGUACUCC-------UgCUCCUGUu -5'
30175 5' -54.9 NC_006273.1 + 104237 0.69 0.878829
Target:  5'- cGCAccucGCCGCCGUGuucGGGCGAGaGCAc -3'
miRNA:   3'- uUGU----UGGCGGUACu--CCUGCUCcUGUu -5'
30175 5' -54.9 NC_006273.1 + 104887 0.66 0.955604
Target:  5'- cGCGGCCGgCGgccGAGGugGAGuGCAAg -3'
miRNA:   3'- uUGUUGGCgGUa--CUCCugCUCcUGUU- -5'
30175 5' -54.9 NC_006273.1 + 105330 0.66 0.966138
Target:  5'- cAGCGGCUGCUGgaaGAGGgcgACGAGGAgGAu -3'
miRNA:   3'- -UUGUUGGCGGUa--CUCC---UGCUCCUgUU- -5'
30175 5' -54.9 NC_006273.1 + 120294 0.7 0.810201
Target:  5'- cGCGGCCGCUuccGAcgagggucccucaccGGGCGAGGACGAu -3'
miRNA:   3'- uUGUUGGCGGua-CU---------------CCUGCUCCUGUU- -5'
30175 5' -54.9 NC_006273.1 + 129638 0.67 0.928364
Target:  5'- uGCAACCucacccaagaGCUAUcGAcGGGCGAGGACGc -3'
miRNA:   3'- uUGUUGG----------CGGUA-CU-CCUGCUCCUGUu -5'
30175 5' -54.9 NC_006273.1 + 134397 0.72 0.701944
Target:  5'- cGACGAacuggaCGCCAU--GGACGAGGACGAa -3'
miRNA:   3'- -UUGUUg-----GCGGUAcuCCUGCUCCUGUU- -5'
30175 5' -54.9 NC_006273.1 + 135657 0.75 0.529814
Target:  5'- cGCGACCGCCucaaaaagcAGGugGAGGACAGu -3'
miRNA:   3'- uUGUUGGCGGuac------UCCugCUCCUGUU- -5'
30175 5' -54.9 NC_006273.1 + 142798 0.67 0.928364
Target:  5'- cAGCAGCCGCCGUcgcuGGugGGcacGGGCGu -3'
miRNA:   3'- -UUGUUGGCGGUAcu--CCugCU---CCUGUu -5'
30175 5' -54.9 NC_006273.1 + 145623 0.68 0.911544
Target:  5'- gGGCGGCgGUCGUGGuGGugGGGGugGc -3'
miRNA:   3'- -UUGUUGgCGGUACU-CCugCUCCugUu -5'
30175 5' -54.9 NC_006273.1 + 145759 0.73 0.671635
Target:  5'- -uCGACC-CCGUGAcGGGCGAGGAUAc -3'
miRNA:   3'- uuGUUGGcGGUACU-CCUGCUCCUGUu -5'
30175 5' -54.9 NC_006273.1 + 145886 0.71 0.760732
Target:  5'- gAGCAGCCGCgAcGAGGugGcGGGCGc -3'
miRNA:   3'- -UUGUUGGCGgUaCUCCugCuCCUGUu -5'
30175 5' -54.9 NC_006273.1 + 147030 0.66 0.955219
Target:  5'- uACGGCgGCCAUGAaGGCGAucaugcuGGGCAGc -3'
miRNA:   3'- uUGUUGgCGGUACUcCUGCU-------CCUGUU- -5'
30175 5' -54.9 NC_006273.1 + 147911 0.68 0.892601
Target:  5'- --gGGCCGCC-UGAGGAaGGGGAgGAg -3'
miRNA:   3'- uugUUGGCGGuACUCCUgCUCCUgUU- -5'
30175 5' -54.9 NC_006273.1 + 149443 0.72 0.721873
Target:  5'- gGGCGACgGCCccGAGGGCGAGGuuAu -3'
miRNA:   3'- -UUGUUGgCGGuaCUCCUGCUCCugUu -5'
30175 5' -54.9 NC_006273.1 + 160531 0.71 0.770186
Target:  5'- cGCGACCGCUgGUGAucGACGAGGACGc -3'
miRNA:   3'- uUGUUGGCGG-UACUc-CUGCUCCUGUu -5'
30175 5' -54.9 NC_006273.1 + 163793 1.03 0.010676
Target:  5'- aAACAACCGCCAUGAGGACGAGGACAAc -3'
miRNA:   3'- -UUGUUGGCGGUACUCCUGCUCCUGUU- -5'
30175 5' -54.9 NC_006273.1 + 163853 0.74 0.589996
Target:  5'- cAGCGGCCGCCGgcGAGGGCccucguuccucGAGGACGGa -3'
miRNA:   3'- -UUGUUGGCGGUa-CUCCUG-----------CUCCUGUU- -5'
30175 5' -54.9 NC_006273.1 + 169879 0.69 0.848695
Target:  5'- aGGCcGCCGCUAucgcUGAGGGgGAGGAgGAg -3'
miRNA:   3'- -UUGuUGGCGGU----ACUCCUgCUCCUgUU- -5'
30175 5' -54.9 NC_006273.1 + 173815 0.69 0.878829
Target:  5'- aAACGGCCGCgCGacccgGccGACGAGGACAAu -3'
miRNA:   3'- -UUGUUGGCG-GUa----CucCUGCUCCUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.