miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30175 5' -54.9 NC_006273.1 + 234638 0.66 0.955604
Target:  5'- cACAGCaCGCCGcaaacgcgcUGAGGACGccGACGc -3'
miRNA:   3'- uUGUUG-GCGGU---------ACUCCUGCucCUGUu -5'
30175 5' -54.9 NC_006273.1 + 213595 0.67 0.94746
Target:  5'- cACAGCCGCCG-GAGaGACGcgccAGGAUc- -3'
miRNA:   3'- uUGUUGGCGGUaCUC-CUGC----UCCUGuu -5'
30175 5' -54.9 NC_006273.1 + 205523 0.67 0.928364
Target:  5'- --aGACCGCUGUGugccucaucucGGACGAGGGCu- -3'
miRNA:   3'- uugUUGGCGGUACu----------CCUGCUCCUGuu -5'
30175 5' -54.9 NC_006273.1 + 200563 0.7 0.815433
Target:  5'- cGACGACUGUCGUGAuGAUGAGGAg-- -3'
miRNA:   3'- -UUGUUGGCGGUACUcCUGCUCCUguu -5'
30175 5' -54.9 NC_006273.1 + 197999 0.67 0.943041
Target:  5'- cGCGGCUGagCGUgugGAGGACGGGGugGAg -3'
miRNA:   3'- uUGUUGGCg-GUA---CUCCUGCUCCugUU- -5'
30175 5' -54.9 NC_006273.1 + 194700 0.66 0.955604
Target:  5'- cACAGCaCGCCGcaaacgcgcUGAGGACGccGACGc -3'
miRNA:   3'- uUGUUG-GCGGU---------ACUCCUGCucCUGUu -5'
30175 5' -54.9 NC_006273.1 + 190361 0.73 0.681781
Target:  5'- aGGCcGCCGCCGUGGGGGCcgcggaggGAGGAgAGg -3'
miRNA:   3'- -UUGuUGGCGGUACUCCUG--------CUCCUgUU- -5'
30175 5' -54.9 NC_006273.1 + 190140 0.66 0.955604
Target:  5'- gAGCAGCCGCC----GGGCGGcacGGGCAAg -3'
miRNA:   3'- -UUGUUGGCGGuacuCCUGCU---CCUGUU- -5'
30175 5' -54.9 NC_006273.1 + 189726 0.68 0.917388
Target:  5'- uGCAACaaGCCgAUGAGGACGuGGcACAGu -3'
miRNA:   3'- uUGUUGg-CGG-UACUCCUGCuCC-UGUU- -5'
30175 5' -54.9 NC_006273.1 + 189038 0.67 0.938386
Target:  5'- cGACAGCCGCgugGUGGGGGCccGGACc- -3'
miRNA:   3'- -UUGUUGGCGg--UACUCCUGcuCCUGuu -5'
30175 5' -54.9 NC_006273.1 + 188417 0.66 0.966138
Target:  5'- -uCGACCGUgGUGaAGGGCGguGGGugGAa -3'
miRNA:   3'- uuGUUGGCGgUAC-UCCUGC--UCCugUU- -5'
30175 5' -54.9 NC_006273.1 + 173815 0.69 0.878829
Target:  5'- aAACGGCCGCgCGacccgGccGACGAGGACAAu -3'
miRNA:   3'- -UUGUUGGCG-GUa----CucCUGCUCCUGUU- -5'
30175 5' -54.9 NC_006273.1 + 169879 0.69 0.848695
Target:  5'- aGGCcGCCGCUAucgcUGAGGGgGAGGAgGAg -3'
miRNA:   3'- -UUGuUGGCGGU----ACUCCUgCUCCUgUU- -5'
30175 5' -54.9 NC_006273.1 + 163853 0.74 0.589996
Target:  5'- cAGCGGCCGCCGgcGAGGGCccucguuccucGAGGACGGa -3'
miRNA:   3'- -UUGUUGGCGGUa-CUCCUG-----------CUCCUGUU- -5'
30175 5' -54.9 NC_006273.1 + 163793 1.03 0.010676
Target:  5'- aAACAACCGCCAUGAGGACGAGGACAAc -3'
miRNA:   3'- -UUGUUGGCGGUACUCCUGCUCCUGUU- -5'
30175 5' -54.9 NC_006273.1 + 160531 0.71 0.770186
Target:  5'- cGCGACCGCUgGUGAucGACGAGGACGc -3'
miRNA:   3'- uUGUUGGCGG-UACUc-CUGCUCCUGUu -5'
30175 5' -54.9 NC_006273.1 + 149443 0.72 0.721873
Target:  5'- gGGCGACgGCCccGAGGGCGAGGuuAu -3'
miRNA:   3'- -UUGUUGgCGGuaCUCCUGCUCCugUu -5'
30175 5' -54.9 NC_006273.1 + 147911 0.68 0.892601
Target:  5'- --gGGCCGCC-UGAGGAaGGGGAgGAg -3'
miRNA:   3'- uugUUGGCGGuACUCCUgCUCCUgUU- -5'
30175 5' -54.9 NC_006273.1 + 147030 0.66 0.955219
Target:  5'- uACGGCgGCCAUGAaGGCGAucaugcuGGGCAGc -3'
miRNA:   3'- uUGUUGgCGGUACUcCUGCU-------CCUGUU- -5'
30175 5' -54.9 NC_006273.1 + 145886 0.71 0.760732
Target:  5'- gAGCAGCCGCgAcGAGGugGcGGGCGc -3'
miRNA:   3'- -UUGUUGGCGgUaCUCCugCuCCUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.