miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30175 5' -54.9 NC_006273.1 + 213595 0.67 0.94746
Target:  5'- cACAGCCGCCG-GAGaGACGcgccAGGAUc- -3'
miRNA:   3'- uUGUUGGCGGUaCUC-CUGC----UCCUGuu -5'
30175 5' -54.9 NC_006273.1 + 104237 0.69 0.878829
Target:  5'- cGCAccucGCCGCCGUGuucGGGCGAGaGCAc -3'
miRNA:   3'- uUGU----UGGCGGUACu--CCUGCUCcUGUu -5'
30175 5' -54.9 NC_006273.1 + 41261 0.69 0.885827
Target:  5'- cGACGGCCuCCGaGGGGugGuGGACAc -3'
miRNA:   3'- -UUGUUGGcGGUaCUCCugCuCCUGUu -5'
30175 5' -54.9 NC_006273.1 + 94849 0.68 0.892601
Target:  5'- gGugGACgGUgGUGGGGACGGGcGACGc -3'
miRNA:   3'- -UugUUGgCGgUACUCCUGCUC-CUGUu -5'
30175 5' -54.9 NC_006273.1 + 73726 0.67 0.922996
Target:  5'- cGACcccGCCGCCAUGGGuGGCGGcGGCGg -3'
miRNA:   3'- -UUGu--UGGCGGUACUC-CUGCUcCUGUu -5'
30175 5' -54.9 NC_006273.1 + 129638 0.67 0.928364
Target:  5'- uGCAACCucacccaagaGCUAUcGAcGGGCGAGGACGc -3'
miRNA:   3'- uUGUUGG----------CGGUA-CU-CCUGCUCCUGUu -5'
30175 5' -54.9 NC_006273.1 + 142798 0.67 0.928364
Target:  5'- cAGCAGCCGCCGUcgcuGGugGGcacGGGCGu -3'
miRNA:   3'- -UUGUUGGCGGUAcu--CCugCU---CCUGUu -5'
30175 5' -54.9 NC_006273.1 + 189038 0.67 0.938386
Target:  5'- cGACAGCCGCgugGUGGGGGCccGGACc- -3'
miRNA:   3'- -UUGUUGGCGg--UACUCCUGcuCCUGuu -5'
30175 5' -54.9 NC_006273.1 + 36713 0.67 0.943041
Target:  5'- uAGCGGCCGCgAgcgGAGGcgcGCGAGcGGCGg -3'
miRNA:   3'- -UUGUUGGCGgUa--CUCC---UGCUC-CUGUu -5'
30175 5' -54.9 NC_006273.1 + 40532 0.69 0.878829
Target:  5'- cGCuACCGCuCAcGGGGAcCGAGGGCGGu -3'
miRNA:   3'- uUGuUGGCG-GUaCUCCU-GCUCCUGUU- -5'
30175 5' -54.9 NC_006273.1 + 99613 0.69 0.864179
Target:  5'- gGACuGCCGCCGUGAGaaGGCGAcGGCGu -3'
miRNA:   3'- -UUGuUGGCGGUACUC--CUGCUcCUGUu -5'
30175 5' -54.9 NC_006273.1 + 47442 0.7 0.829085
Target:  5'- gGACGcCCGCgAgcgcggcgaguucGGGGACGAGGACGAa -3'
miRNA:   3'- -UUGUuGGCGgUa------------CUCCUGCUCCUGUU- -5'
30175 5' -54.9 NC_006273.1 + 1153 0.77 0.444343
Target:  5'- cGGgGACgGUgGUGAGGACGGGGACAGg -3'
miRNA:   3'- -UUgUUGgCGgUACUCCUGCUCCUGUU- -5'
30175 5' -54.9 NC_006273.1 + 135657 0.75 0.529814
Target:  5'- cGCGACCGCCucaaaaagcAGGugGAGGACAGu -3'
miRNA:   3'- uUGUUGGCGGuac------UCCugCUCCUGUU- -5'
30175 5' -54.9 NC_006273.1 + 163853 0.74 0.589996
Target:  5'- cAGCGGCCGCCGgcGAGGGCccucguuccucGAGGACGGa -3'
miRNA:   3'- -UUGUUGGCGGUa-CUCCUG-----------CUCCUGUU- -5'
30175 5' -54.9 NC_006273.1 + 84858 0.72 0.701944
Target:  5'- cGGCGGCCGUCA--GGGugGAGGGCu- -3'
miRNA:   3'- -UUGUUGGCGGUacUCCugCUCCUGuu -5'
30175 5' -54.9 NC_006273.1 + 71627 0.72 0.721873
Target:  5'- gGGCAgGCCGUgGgggGAGGACGAGGAgGAc -3'
miRNA:   3'- -UUGU-UGGCGgUa--CUCCUGCUCCUgUU- -5'
30175 5' -54.9 NC_006273.1 + 101992 0.71 0.796874
Target:  5'- cAGCAGgCGCCGUGGGGcugaaagAgGAGGACGu -3'
miRNA:   3'- -UUGUUgGCGGUACUCC-------UgCUCCUGUu -5'
30175 5' -54.9 NC_006273.1 + 96605 0.71 0.797773
Target:  5'- gGACAGCCGCCG-GAGaagccGACGAGGGa-- -3'
miRNA:   3'- -UUGUUGGCGGUaCUC-----CUGCUCCUguu -5'
30175 5' -54.9 NC_006273.1 + 120294 0.7 0.810201
Target:  5'- cGCGGCCGCUuccGAcgagggucccucaccGGGCGAGGACGAu -3'
miRNA:   3'- uUGUUGGCGGua-CU---------------CCUGCUCCUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.