Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30175 | 5' | -54.9 | NC_006273.1 | + | 41091 | 0.77 | 0.444343 |
Target: 5'- cGGgGACgGUgGUGAGGACGGGGACAGg -3' miRNA: 3'- -UUgUUGgCGgUACUCCUGCUCCUGUU- -5' |
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30175 | 5' | -54.9 | NC_006273.1 | + | 31450 | 0.68 | 0.917388 |
Target: 5'- uGGCGaaGCCGCCAUGAGG-CGGuGGCu- -3' miRNA: 3'- -UUGU--UGGCGGUACUCCuGCUcCUGuu -5' |
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30175 | 5' | -54.9 | NC_006273.1 | + | 205523 | 0.67 | 0.928364 |
Target: 5'- --aGACCGCUGUGugccucaucucGGACGAGGGCu- -3' miRNA: 3'- uugUUGGCGGUACu----------CCUGCUCCUGuu -5' |
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30175 | 5' | -54.9 | NC_006273.1 | + | 188417 | 0.66 | 0.966138 |
Target: 5'- -uCGACCGUgGUGaAGGGCGguGGGugGAa -3' miRNA: 3'- uuGUUGGCGgUAC-UCCUGC--UCCugUU- -5' |
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30175 | 5' | -54.9 | NC_006273.1 | + | 12186 | 0.72 | 0.701944 |
Target: 5'- --gGGCCGCgGuccucuucUGAGGACGAGGACu- -3' miRNA: 3'- uugUUGGCGgU--------ACUCCUGCUCCUGuu -5' |
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30175 | 5' | -54.9 | NC_006273.1 | + | 134397 | 0.72 | 0.701944 |
Target: 5'- cGACGAacuggaCGCCAU--GGACGAGGACGAa -3' miRNA: 3'- -UUGUUg-----GCGGUAcuCCUGCUCCUGUU- -5' |
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30175 | 5' | -54.9 | NC_006273.1 | + | 31525 | 0.72 | 0.741493 |
Target: 5'- cGGCAACCcCUAUGAGGACGAcGACu- -3' miRNA: 3'- -UUGUUGGcGGUACUCCUGCUcCUGuu -5' |
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30175 | 5' | -54.9 | NC_006273.1 | + | 145886 | 0.71 | 0.760732 |
Target: 5'- gAGCAGCCGCgAcGAGGugGcGGGCGc -3' miRNA: 3'- -UUGUUGGCGgUaCUCCugCuCCUGUu -5' |
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30175 | 5' | -54.9 | NC_006273.1 | + | 200563 | 0.7 | 0.815433 |
Target: 5'- cGACGACUGUCGUGAuGAUGAGGAg-- -3' miRNA: 3'- -UUGUUGGCGGUACUcCUGCUCCUguu -5' |
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30175 | 5' | -54.9 | NC_006273.1 | + | 145623 | 0.68 | 0.911544 |
Target: 5'- gGGCGGCgGUCGUGGuGGugGGGGugGc -3' miRNA: 3'- -UUGUUGgCGGUACU-CCugCUCCugUu -5' |
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30175 | 5' | -54.9 | NC_006273.1 | + | 169879 | 0.69 | 0.848695 |
Target: 5'- aGGCcGCCGCUAucgcUGAGGGgGAGGAgGAg -3' miRNA: 3'- -UUGuUGGCGGU----ACUCCUgCUCCUgUU- -5' |
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30175 | 5' | -54.9 | NC_006273.1 | + | 21275 | 0.7 | 0.815433 |
Target: 5'- uGACAGCCGCCAguacGACGGGGAa-- -3' miRNA: 3'- -UUGUUGGCGGUacucCUGCUCCUguu -5' |
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30175 | 5' | -54.9 | NC_006273.1 | + | 72540 | 0.75 | 0.569744 |
Target: 5'- --aGACCGCg--GAGGAUGAGGACGAg -3' miRNA: 3'- uugUUGGCGguaCUCCUGCUCCUGUU- -5' |
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30175 | 5' | -54.9 | NC_006273.1 | + | 173815 | 0.69 | 0.878829 |
Target: 5'- aAACGGCCGCgCGacccgGccGACGAGGACAAu -3' miRNA: 3'- -UUGUUGGCG-GUa----CucCUGCUCCUGUU- -5' |
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30175 | 5' | -54.9 | NC_006273.1 | + | 145759 | 0.73 | 0.671635 |
Target: 5'- -uCGACC-CCGUGAcGGGCGAGGAUAc -3' miRNA: 3'- uuGUUGGcGGUACU-CCUGCUCCUGUu -5' |
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30175 | 5' | -54.9 | NC_006273.1 | + | 160531 | 0.71 | 0.770186 |
Target: 5'- cGCGACCGCUgGUGAucGACGAGGACGc -3' miRNA: 3'- uUGUUGGCGG-UACUc-CUGCUCCUGUu -5' |
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30175 | 5' | -54.9 | NC_006273.1 | + | 147911 | 0.68 | 0.892601 |
Target: 5'- --gGGCCGCC-UGAGGAaGGGGAgGAg -3' miRNA: 3'- uugUUGGCGGuACUCCUgCUCCUgUU- -5' |
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30175 | 5' | -54.9 | NC_006273.1 | + | 189726 | 0.68 | 0.917388 |
Target: 5'- uGCAACaaGCCgAUGAGGACGuGGcACAGu -3' miRNA: 3'- uUGUUGg-CGG-UACUCCUGCuCC-UGUU- -5' |
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30175 | 5' | -54.9 | NC_006273.1 | + | 190361 | 0.73 | 0.681781 |
Target: 5'- aGGCcGCCGCCGUGGGGGCcgcggaggGAGGAgAGg -3' miRNA: 3'- -UUGuUGGCGGUACUCCUG--------CUCCUgUU- -5' |
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30175 | 5' | -54.9 | NC_006273.1 | + | 149443 | 0.72 | 0.721873 |
Target: 5'- gGGCGACgGCCccGAGGGCGAGGuuAu -3' miRNA: 3'- -UUGUUGgCGGuaCUCCUGCUCCugUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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