miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30176 3' -52.5 NC_006273.1 + 1932 0.66 0.994916
Target:  5'- uGGGCGCGGugcuGC-CCGcGCGGUGg-- -3'
miRNA:   3'- -CCUGUGUCuau-CGaGGU-CGCCACaug -5'
30176 3' -52.5 NC_006273.1 + 196824 0.66 0.994916
Target:  5'- uGGGCGCGGugcuGC-CCGcGCGGUGg-- -3'
miRNA:   3'- -CCUGUGUCuau-CGaGGU-CGCCACaug -5'
30176 3' -52.5 NC_006273.1 + 116212 0.66 0.994124
Target:  5'- -aACGCAGcgAGCU-CAGCGGcUGUccGCg -3'
miRNA:   3'- ccUGUGUCuaUCGAgGUCGCC-ACA--UG- -5'
30176 3' -52.5 NC_006273.1 + 164798 0.66 0.993235
Target:  5'- uGGGCuuguagccaGCAGu--GCUCCAGCGGcGUu- -3'
miRNA:   3'- -CCUG---------UGUCuauCGAGGUCGCCaCAug -5'
30176 3' -52.5 NC_006273.1 + 215549 0.66 0.993235
Target:  5'- aGACGCacgcuggaaaAGAguGCUCCAGCcGGUGcgGCa -3'
miRNA:   3'- cCUGUG----------UCUauCGAGGUCG-CCACa-UG- -5'
30176 3' -52.5 NC_006273.1 + 4570 0.66 0.993235
Target:  5'- cGGAUaACGcGGUGGCgacggCAGCGGUGgugGCg -3'
miRNA:   3'- -CCUG-UGU-CUAUCGag---GUCGCCACa--UG- -5'
30176 3' -52.5 NC_006273.1 + 28584 0.66 0.992243
Target:  5'- cGGC-CAGc--GCUCUaagcgaGGCGGUGUGCg -3'
miRNA:   3'- cCUGuGUCuauCGAGG------UCGCCACAUG- -5'
30176 3' -52.5 NC_006273.1 + 68023 0.66 0.992243
Target:  5'- gGGugGCGGA-GGaCUgCCGGCaGGUGUGg -3'
miRNA:   3'- -CCugUGUCUaUC-GA-GGUCG-CCACAUg -5'
30176 3' -52.5 NC_006273.1 + 141024 0.66 0.992243
Target:  5'- cGGcCcCGGAUGguGCUCCagGGCGGUGggACg -3'
miRNA:   3'- -CCuGuGUCUAU--CGAGG--UCGCCACa-UG- -5'
30176 3' -52.5 NC_006273.1 + 73261 0.66 0.992243
Target:  5'- cGGCGCAGAgccUGGUggaacucaUCagucGCGGUGUGCg -3'
miRNA:   3'- cCUGUGUCU---AUCG--------AGgu--CGCCACAUG- -5'
30176 3' -52.5 NC_006273.1 + 46049 0.66 0.990782
Target:  5'- gGGGCucauGCGGGUGGCcacccacccgCCGacgccgcaggugccGCGGUGUACg -3'
miRNA:   3'- -CCUG----UGUCUAUCGa---------GGU--------------CGCCACAUG- -5'
30176 3' -52.5 NC_006273.1 + 77659 0.67 0.989911
Target:  5'- -cACGCAGAU-GCUCaCGGCGGcGcGCg -3'
miRNA:   3'- ccUGUGUCUAuCGAG-GUCGCCaCaUG- -5'
30176 3' -52.5 NC_006273.1 + 38150 0.67 0.988698
Target:  5'- -cGCGCAGAaAGUgcgacagcuccgccgCCAGCGG-GUACa -3'
miRNA:   3'- ccUGUGUCUaUCGa--------------GGUCGCCaCAUG- -5'
30176 3' -52.5 NC_006273.1 + 233043 0.67 0.988698
Target:  5'- -cGCGCAGAaAGUgcgacagcuccgccgCCAGCGG-GUACa -3'
miRNA:   3'- ccUGUGUCUaUCGa--------------GGUCGCCaCAUG- -5'
30176 3' -52.5 NC_006273.1 + 103285 0.67 0.988556
Target:  5'- cGGGCAgCGGuc-GCUCCAGCaGcgGUGCc -3'
miRNA:   3'- -CCUGU-GUCuauCGAGGUCGcCa-CAUG- -5'
30176 3' -52.5 NC_006273.1 + 42221 0.67 0.987064
Target:  5'- cGGGCAgCGug-GGCUUCGGCGGccgGUGCc -3'
miRNA:   3'- -CCUGU-GUcuaUCGAGGUCGCCa--CAUG- -5'
30176 3' -52.5 NC_006273.1 + 137404 0.67 0.987064
Target:  5'- cGGACGCcugcGAcguUGGCUCucgCAGCccgaGGUGUGCg -3'
miRNA:   3'- -CCUGUGu---CU---AUCGAG---GUCG----CCACAUG- -5'
30176 3' -52.5 NC_006273.1 + 54939 0.67 0.987064
Target:  5'- uGGGCugcaguCGGGUGGUggCGGCGGUG-GCg -3'
miRNA:   3'- -CCUGu-----GUCUAUCGagGUCGCCACaUG- -5'
30176 3' -52.5 NC_006273.1 + 170935 0.67 0.986589
Target:  5'- gGGACgauguaccaguuuaAUAGGUcGCUCgCGGCcaGGUGUGCg -3'
miRNA:   3'- -CCUG--------------UGUCUAuCGAG-GUCG--CCACAUG- -5'
30176 3' -52.5 NC_006273.1 + 1729 0.67 0.985427
Target:  5'- cGGACG-GGAgcuGCgCCGGCGGUGggccgGCa -3'
miRNA:   3'- -CCUGUgUCUau-CGaGGUCGCCACa----UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.