miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30176 3' -52.5 NC_006273.1 + 164650 1 0.034845
Target:  5'- cGGACACAGAUAGCUCCAGC-GUGUACg -3'
miRNA:   3'- -CCUGUGUCUAUCGAGGUCGcCACAUG- -5'
30176 3' -52.5 NC_006273.1 + 208817 0.74 0.788715
Target:  5'- uGGcGCACAGGUugAGC-CCGGCGGUGg-- -3'
miRNA:   3'- -CC-UGUGUCUA--UCGaGGUCGCCACaug -5'
30176 3' -52.5 NC_006273.1 + 29808 0.72 0.871611
Target:  5'- cGGGC-CAGGUAGUagaCGGCGGUGUccucGCg -3'
miRNA:   3'- -CCUGuGUCUAUCGag-GUCGCCACA----UG- -5'
30176 3' -52.5 NC_006273.1 + 103417 0.72 0.871611
Target:  5'- cGGACAgGGAgcGUUCCAGCGGcGa-- -3'
miRNA:   3'- -CCUGUgUCUauCGAGGUCGCCaCaug -5'
30176 3' -52.5 NC_006273.1 + 221029 0.72 0.878829
Target:  5'- aGGcaGCGCGGggAGCUCCGGCGGcacaacUGCa -3'
miRNA:   3'- -CC--UGUGUCuaUCGAGGUCGCCac----AUG- -5'
30176 3' -52.5 NC_006273.1 + 36745 0.71 0.905463
Target:  5'- cGGAgCuCAGAccgGGCUCCGGCGG-GUGg -3'
miRNA:   3'- -CCU-GuGUCUa--UCGAGGUCGCCaCAUg -5'
30176 3' -52.5 NC_006273.1 + 160552 0.7 0.938386
Target:  5'- aGGACGCGGAgcccgcGGCUgguaCgAGCGGUGgGCu -3'
miRNA:   3'- -CCUGUGUCUa-----UCGA----GgUCGCCACaUG- -5'
30176 3' -52.5 NC_006273.1 + 91234 0.7 0.938386
Target:  5'- cGGCGCGcGA-GGCUUCGGCGGcGUGCc -3'
miRNA:   3'- cCUGUGU-CUaUCGAGGUCGCCaCAUG- -5'
30176 3' -52.5 NC_006273.1 + 123257 0.7 0.943041
Target:  5'- cGGCgACGGGUAGCcgCCAaaaGGUGUGCa -3'
miRNA:   3'- cCUG-UGUCUAUCGa-GGUcg-CCACAUG- -5'
30176 3' -52.5 NC_006273.1 + 193978 0.7 0.943041
Target:  5'- uGGugGCAGAUGGCggugUCCAcuugugcuugucGCGGcaGUGCa -3'
miRNA:   3'- -CCugUGUCUAUCG----AGGU------------CGCCa-CAUG- -5'
30176 3' -52.5 NC_006273.1 + 160421 0.69 0.953257
Target:  5'- aGGACGCGGAaaaagaauguccugGGCUaagCAGCGG-GUGCc -3'
miRNA:   3'- -CCUGUGUCUa-------------UCGAg--GUCGCCaCAUG- -5'
30176 3' -52.5 NC_006273.1 + 34640 0.69 0.955604
Target:  5'- uGGAC-CAGAcAGCUgCGGCGaaUGUACa -3'
miRNA:   3'- -CCUGuGUCUaUCGAgGUCGCc-ACAUG- -5'
30176 3' -52.5 NC_006273.1 + 102534 0.69 0.955604
Target:  5'- gGGAUGCgAGAUgGGgUCCAGCaGcGUGUGCa -3'
miRNA:   3'- -CCUGUG-UCUA-UCgAGGUCG-C-CACAUG- -5'
30176 3' -52.5 NC_006273.1 + 29601 0.69 0.962845
Target:  5'- aGACGCAGuuccGUUcCCGGCGG-GUACg -3'
miRNA:   3'- cCUGUGUCuau-CGA-GGUCGCCaCAUG- -5'
30176 3' -52.5 NC_006273.1 + 48825 0.68 0.972097
Target:  5'- -cACACAGGgccugaAGCUCCuGCGGccacagGUGCg -3'
miRNA:   3'- ccUGUGUCUa-----UCGAGGuCGCCa-----CAUG- -5'
30176 3' -52.5 NC_006273.1 + 195369 0.68 0.97346
Target:  5'- cGGGCAauugcaugucgccCAGAaagaacgugguuGCUCCGGCGGcGUGCa -3'
miRNA:   3'- -CCUGU-------------GUCUau----------CGAGGUCGCCaCAUG- -5'
30176 3' -52.5 NC_006273.1 + 167430 0.68 0.974774
Target:  5'- aGugGCGGGcgcGCUCuCGGCGGUcaGUACg -3'
miRNA:   3'- cCugUGUCUau-CGAG-GUCGCCA--CAUG- -5'
30176 3' -52.5 NC_006273.1 + 219812 0.68 0.975791
Target:  5'- gGGAUccaACAcGUAGCUCUgcgaguuggugucguAGCGGUGUAg -3'
miRNA:   3'- -CCUG---UGUcUAUCGAGG---------------UCGCCACAUg -5'
30176 3' -52.5 NC_006273.1 + 172427 0.68 0.97702
Target:  5'- uGACAcCAGAgaaucagaggagcUGGCaCCAGCGGUGgcCa -3'
miRNA:   3'- cCUGU-GUCU-------------AUCGaGGUCGCCACauG- -5'
30176 3' -52.5 NC_006273.1 + 82331 0.68 0.97726
Target:  5'- cGGACAcCAGAUAGggaaagagguuCUgCAGCGGcugcGUGCa -3'
miRNA:   3'- -CCUGU-GUCUAUC-----------GAgGUCGCCa---CAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.