miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30176 3' -52.5 NC_006273.1 + 188235 0.68 0.97726
Target:  5'- --uCAUuuGUAGCUCCAGCGcGUGUcGCa -3'
miRNA:   3'- ccuGUGucUAUCGAGGUCGC-CACA-UG- -5'
30176 3' -52.5 NC_006273.1 + 82331 0.68 0.97726
Target:  5'- cGGACAcCAGAUAGggaaagagguuCUgCAGCGGcugcGUGCa -3'
miRNA:   3'- -CCUGU-GUCUAUC-----------GAgGUCGCCa---CAUG- -5'
30176 3' -52.5 NC_006273.1 + 110753 0.68 0.97956
Target:  5'- aGGAUACAGGUcuGGUUaaaguguGGCGGUGUAg -3'
miRNA:   3'- -CCUGUGUCUA--UCGAgg-----UCGCCACAUg -5'
30176 3' -52.5 NC_006273.1 + 139549 0.68 0.97956
Target:  5'- -cGCGCAacauGAUGGCggCGGCGGUGgUGCg -3'
miRNA:   3'- ccUGUGU----CUAUCGagGUCGCCAC-AUG- -5'
30176 3' -52.5 NC_006273.1 + 231682 0.68 0.97956
Target:  5'- gGGGgGCAGGaAGCUUggUGGCGGUGUuCa -3'
miRNA:   3'- -CCUgUGUCUaUCGAG--GUCGCCACAuG- -5'
30176 3' -52.5 NC_006273.1 + 196903 0.68 0.981683
Target:  5'- cGGCACGGAgacggaGGCcgCCGGCGGggacgcgccGUGCg -3'
miRNA:   3'- cCUGUGUCUa-----UCGa-GGUCGCCa--------CAUG- -5'
30176 3' -52.5 NC_006273.1 + 2010 0.68 0.981683
Target:  5'- cGGCACGGAgacggaGGCcgCCGGCGGggacgcgccGUGCg -3'
miRNA:   3'- cCUGUGUCUa-----UCGa-GGUCGCCa--------CAUG- -5'
30176 3' -52.5 NC_006273.1 + 104597 0.68 0.981683
Target:  5'- cGAUGCAGcUGGC-CCAGCGccUGUGCg -3'
miRNA:   3'- cCUGUGUCuAUCGaGGUCGCc-ACAUG- -5'
30176 3' -52.5 NC_006273.1 + 33256 0.68 0.981683
Target:  5'- cGACgGCGGGUccgAGUUCCAGCGGggccuUGCg -3'
miRNA:   3'- cCUG-UGUCUA---UCGAGGUCGCCac---AUG- -5'
30176 3' -52.5 NC_006273.1 + 28837 0.67 0.983636
Target:  5'- gGGGCAgCAGAggUAGCUggCCAGaCGcUGUGCa -3'
miRNA:   3'- -CCUGU-GUCU--AUCGA--GGUC-GCcACAUG- -5'
30176 3' -52.5 NC_006273.1 + 196621 0.67 0.985427
Target:  5'- cGGACG-GGAgcuGCgCCGGCGGUGggccgGCa -3'
miRNA:   3'- -CCUGUgUCUau-CGaGGUCGCCACa----UG- -5'
30176 3' -52.5 NC_006273.1 + 1729 0.67 0.985427
Target:  5'- cGGACG-GGAgcuGCgCCGGCGGUGggccgGCa -3'
miRNA:   3'- -CCUGUgUCUau-CGaGGUCGCCACa----UG- -5'
30176 3' -52.5 NC_006273.1 + 170935 0.67 0.986589
Target:  5'- gGGACgauguaccaguuuaAUAGGUcGCUCgCGGCcaGGUGUGCg -3'
miRNA:   3'- -CCUG--------------UGUCUAuCGAG-GUCG--CCACAUG- -5'
30176 3' -52.5 NC_006273.1 + 42221 0.67 0.987064
Target:  5'- cGGGCAgCGug-GGCUUCGGCGGccgGUGCc -3'
miRNA:   3'- -CCUGU-GUcuaUCGAGGUCGCCa--CAUG- -5'
30176 3' -52.5 NC_006273.1 + 137404 0.67 0.987064
Target:  5'- cGGACGCcugcGAcguUGGCUCucgCAGCccgaGGUGUGCg -3'
miRNA:   3'- -CCUGUGu---CU---AUCGAG---GUCG----CCACAUG- -5'
30176 3' -52.5 NC_006273.1 + 54939 0.67 0.987064
Target:  5'- uGGGCugcaguCGGGUGGUggCGGCGGUG-GCg -3'
miRNA:   3'- -CCUGu-----GUCUAUCGagGUCGCCACaUG- -5'
30176 3' -52.5 NC_006273.1 + 103285 0.67 0.988556
Target:  5'- cGGGCAgCGGuc-GCUCCAGCaGcgGUGCc -3'
miRNA:   3'- -CCUGU-GUCuauCGAGGUCGcCa-CAUG- -5'
30176 3' -52.5 NC_006273.1 + 38150 0.67 0.988698
Target:  5'- -cGCGCAGAaAGUgcgacagcuccgccgCCAGCGG-GUACa -3'
miRNA:   3'- ccUGUGUCUaUCGa--------------GGUCGCCaCAUG- -5'
30176 3' -52.5 NC_006273.1 + 233043 0.67 0.988698
Target:  5'- -cGCGCAGAaAGUgcgacagcuccgccgCCAGCGG-GUACa -3'
miRNA:   3'- ccUGUGUCUaUCGa--------------GGUCGCCaCAUG- -5'
30176 3' -52.5 NC_006273.1 + 77659 0.67 0.989911
Target:  5'- -cACGCAGAU-GCUCaCGGCGGcGcGCg -3'
miRNA:   3'- ccUGUGUCUAuCGAG-GUCGCCaCaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.