miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30176 3' -52.5 NC_006273.1 + 196621 0.67 0.985427
Target:  5'- cGGACG-GGAgcuGCgCCGGCGGUGggccgGCa -3'
miRNA:   3'- -CCUGUgUCUau-CGaGGUCGCCACa----UG- -5'
30176 3' -52.5 NC_006273.1 + 28837 0.67 0.983636
Target:  5'- gGGGCAgCAGAggUAGCUggCCAGaCGcUGUGCa -3'
miRNA:   3'- -CCUGU-GUCU--AUCGA--GGUC-GCcACAUG- -5'
30176 3' -52.5 NC_006273.1 + 196903 0.68 0.981683
Target:  5'- cGGCACGGAgacggaGGCcgCCGGCGGggacgcgccGUGCg -3'
miRNA:   3'- cCUGUGUCUa-----UCGa-GGUCGCCa--------CAUG- -5'
30176 3' -52.5 NC_006273.1 + 33256 0.68 0.981683
Target:  5'- cGACgGCGGGUccgAGUUCCAGCGGggccuUGCg -3'
miRNA:   3'- cCUG-UGUCUA---UCGAGGUCGCCac---AUG- -5'
30176 3' -52.5 NC_006273.1 + 104597 0.68 0.981683
Target:  5'- cGAUGCAGcUGGC-CCAGCGccUGUGCg -3'
miRNA:   3'- cCUGUGUCuAUCGaGGUCGCc-ACAUG- -5'
30176 3' -52.5 NC_006273.1 + 2010 0.68 0.981683
Target:  5'- cGGCACGGAgacggaGGCcgCCGGCGGggacgcgccGUGCg -3'
miRNA:   3'- cCUGUGUCUa-----UCGa-GGUCGCCa--------CAUG- -5'
30176 3' -52.5 NC_006273.1 + 110753 0.68 0.97956
Target:  5'- aGGAUACAGGUcuGGUUaaaguguGGCGGUGUAg -3'
miRNA:   3'- -CCUGUGUCUA--UCGAgg-----UCGCCACAUg -5'
30176 3' -52.5 NC_006273.1 + 231682 0.68 0.97956
Target:  5'- gGGGgGCAGGaAGCUUggUGGCGGUGUuCa -3'
miRNA:   3'- -CCUgUGUCUaUCGAG--GUCGCCACAuG- -5'
30176 3' -52.5 NC_006273.1 + 139549 0.68 0.97956
Target:  5'- -cGCGCAacauGAUGGCggCGGCGGUGgUGCg -3'
miRNA:   3'- ccUGUGU----CUAUCGagGUCGCCAC-AUG- -5'
30176 3' -52.5 NC_006273.1 + 170492 0.68 0.97726
Target:  5'- cGGACACAuGUAGCcgUCCAGgucgcacgucuCGGUGgUGCc -3'
miRNA:   3'- -CCUGUGUcUAUCG--AGGUC-----------GCCAC-AUG- -5'
30176 3' -52.5 NC_006273.1 + 188235 0.68 0.97726
Target:  5'- --uCAUuuGUAGCUCCAGCGcGUGUcGCa -3'
miRNA:   3'- ccuGUGucUAUCGAGGUCGC-CACA-UG- -5'
30176 3' -52.5 NC_006273.1 + 82331 0.68 0.97726
Target:  5'- cGGACAcCAGAUAGggaaagagguuCUgCAGCGGcugcGUGCa -3'
miRNA:   3'- -CCUGU-GUCUAUC-----------GAgGUCGCCa---CAUG- -5'
30176 3' -52.5 NC_006273.1 + 172427 0.68 0.97702
Target:  5'- uGACAcCAGAgaaucagaggagcUGGCaCCAGCGGUGgcCa -3'
miRNA:   3'- cCUGU-GUCU-------------AUCGaGGUCGCCACauG- -5'
30176 3' -52.5 NC_006273.1 + 219812 0.68 0.975791
Target:  5'- gGGAUccaACAcGUAGCUCUgcgaguuggugucguAGCGGUGUAg -3'
miRNA:   3'- -CCUG---UGUcUAUCGAGG---------------UCGCCACAUg -5'
30176 3' -52.5 NC_006273.1 + 167430 0.68 0.974774
Target:  5'- aGugGCGGGcgcGCUCuCGGCGGUcaGUACg -3'
miRNA:   3'- cCugUGUCUau-CGAG-GUCGCCA--CAUG- -5'
30176 3' -52.5 NC_006273.1 + 195369 0.68 0.97346
Target:  5'- cGGGCAauugcaugucgccCAGAaagaacgugguuGCUCCGGCGGcGUGCa -3'
miRNA:   3'- -CCUGU-------------GUCUau----------CGAGGUCGCCaCAUG- -5'
30176 3' -52.5 NC_006273.1 + 48825 0.68 0.972097
Target:  5'- -cACACAGGgccugaAGCUCCuGCGGccacagGUGCg -3'
miRNA:   3'- ccUGUGUCUa-----UCGAGGuCGCCa-----CAUG- -5'
30176 3' -52.5 NC_006273.1 + 29601 0.69 0.962845
Target:  5'- aGACGCAGuuccGUUcCCGGCGG-GUACg -3'
miRNA:   3'- cCUGUGUCuau-CGA-GGUCGCCaCAUG- -5'
30176 3' -52.5 NC_006273.1 + 102534 0.69 0.955604
Target:  5'- gGGAUGCgAGAUgGGgUCCAGCaGcGUGUGCa -3'
miRNA:   3'- -CCUGUG-UCUA-UCgAGGUCG-C-CACAUG- -5'
30176 3' -52.5 NC_006273.1 + 34640 0.69 0.955604
Target:  5'- uGGAC-CAGAcAGCUgCGGCGaaUGUACa -3'
miRNA:   3'- -CCUGuGUCUaUCGAgGUCGCc-ACAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.