miRNA display CGI


Results 1 - 20 of 51 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30176 3' -52.5 NC_006273.1 + 1729 0.67 0.985427
Target:  5'- cGGACG-GGAgcuGCgCCGGCGGUGggccgGCa -3'
miRNA:   3'- -CCUGUgUCUau-CGaGGUCGCCACa----UG- -5'
30176 3' -52.5 NC_006273.1 + 1932 0.66 0.994916
Target:  5'- uGGGCGCGGugcuGC-CCGcGCGGUGg-- -3'
miRNA:   3'- -CCUGUGUCuau-CGaGGU-CGCCACaug -5'
30176 3' -52.5 NC_006273.1 + 2010 0.68 0.981683
Target:  5'- cGGCACGGAgacggaGGCcgCCGGCGGggacgcgccGUGCg -3'
miRNA:   3'- cCUGUGUCUa-----UCGa-GGUCGCCa--------CAUG- -5'
30176 3' -52.5 NC_006273.1 + 4570 0.66 0.993235
Target:  5'- cGGAUaACGcGGUGGCgacggCAGCGGUGgugGCg -3'
miRNA:   3'- -CCUG-UGU-CUAUCGag---GUCGCCACa--UG- -5'
30176 3' -52.5 NC_006273.1 + 28584 0.66 0.992243
Target:  5'- cGGC-CAGc--GCUCUaagcgaGGCGGUGUGCg -3'
miRNA:   3'- cCUGuGUCuauCGAGG------UCGCCACAUG- -5'
30176 3' -52.5 NC_006273.1 + 28837 0.67 0.983636
Target:  5'- gGGGCAgCAGAggUAGCUggCCAGaCGcUGUGCa -3'
miRNA:   3'- -CCUGU-GUCU--AUCGA--GGUC-GCcACAUG- -5'
30176 3' -52.5 NC_006273.1 + 29601 0.69 0.962845
Target:  5'- aGACGCAGuuccGUUcCCGGCGG-GUACg -3'
miRNA:   3'- cCUGUGUCuau-CGA-GGUCGCCaCAUG- -5'
30176 3' -52.5 NC_006273.1 + 29808 0.72 0.871611
Target:  5'- cGGGC-CAGGUAGUagaCGGCGGUGUccucGCg -3'
miRNA:   3'- -CCUGuGUCUAUCGag-GUCGCCACA----UG- -5'
30176 3' -52.5 NC_006273.1 + 33256 0.68 0.981683
Target:  5'- cGACgGCGGGUccgAGUUCCAGCGGggccuUGCg -3'
miRNA:   3'- cCUG-UGUCUA---UCGAGGUCGCCac---AUG- -5'
30176 3' -52.5 NC_006273.1 + 34640 0.69 0.955604
Target:  5'- uGGAC-CAGAcAGCUgCGGCGaaUGUACa -3'
miRNA:   3'- -CCUGuGUCUaUCGAgGUCGCc-ACAUG- -5'
30176 3' -52.5 NC_006273.1 + 36745 0.71 0.905463
Target:  5'- cGGAgCuCAGAccgGGCUCCGGCGG-GUGg -3'
miRNA:   3'- -CCU-GuGUCUa--UCGAGGUCGCCaCAUg -5'
30176 3' -52.5 NC_006273.1 + 38150 0.67 0.988698
Target:  5'- -cGCGCAGAaAGUgcgacagcuccgccgCCAGCGG-GUACa -3'
miRNA:   3'- ccUGUGUCUaUCGa--------------GGUCGCCaCAUG- -5'
30176 3' -52.5 NC_006273.1 + 42221 0.67 0.987064
Target:  5'- cGGGCAgCGug-GGCUUCGGCGGccgGUGCc -3'
miRNA:   3'- -CCUGU-GUcuaUCGAGGUCGCCa--CAUG- -5'
30176 3' -52.5 NC_006273.1 + 46049 0.66 0.990782
Target:  5'- gGGGCucauGCGGGUGGCcacccacccgCCGacgccgcaggugccGCGGUGUACg -3'
miRNA:   3'- -CCUG----UGUCUAUCGa---------GGU--------------CGCCACAUG- -5'
30176 3' -52.5 NC_006273.1 + 48825 0.68 0.972097
Target:  5'- -cACACAGGgccugaAGCUCCuGCGGccacagGUGCg -3'
miRNA:   3'- ccUGUGUCUa-----UCGAGGuCGCCa-----CAUG- -5'
30176 3' -52.5 NC_006273.1 + 54939 0.67 0.987064
Target:  5'- uGGGCugcaguCGGGUGGUggCGGCGGUG-GCg -3'
miRNA:   3'- -CCUGu-----GUCUAUCGagGUCGCCACaUG- -5'
30176 3' -52.5 NC_006273.1 + 68023 0.66 0.992243
Target:  5'- gGGugGCGGA-GGaCUgCCGGCaGGUGUGg -3'
miRNA:   3'- -CCugUGUCUaUC-GA-GGUCG-CCACAUg -5'
30176 3' -52.5 NC_006273.1 + 73261 0.66 0.992243
Target:  5'- cGGCGCAGAgccUGGUggaacucaUCagucGCGGUGUGCg -3'
miRNA:   3'- cCUGUGUCU---AUCG--------AGgu--CGCCACAUG- -5'
30176 3' -52.5 NC_006273.1 + 77659 0.67 0.989911
Target:  5'- -cACGCAGAU-GCUCaCGGCGGcGcGCg -3'
miRNA:   3'- ccUGUGUCUAuCGAG-GUCGCCaCaUG- -5'
30176 3' -52.5 NC_006273.1 + 82331 0.68 0.97726
Target:  5'- cGGACAcCAGAUAGggaaagagguuCUgCAGCGGcugcGUGCa -3'
miRNA:   3'- -CCUGU-GUCUAUC-----------GAgGUCGCCa---CAUG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.