Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30176 | 3' | -52.5 | NC_006273.1 | + | 1729 | 0.67 | 0.985427 |
Target: 5'- cGGACG-GGAgcuGCgCCGGCGGUGggccgGCa -3' miRNA: 3'- -CCUGUgUCUau-CGaGGUCGCCACa----UG- -5' |
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30176 | 3' | -52.5 | NC_006273.1 | + | 1932 | 0.66 | 0.994916 |
Target: 5'- uGGGCGCGGugcuGC-CCGcGCGGUGg-- -3' miRNA: 3'- -CCUGUGUCuau-CGaGGU-CGCCACaug -5' |
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30176 | 3' | -52.5 | NC_006273.1 | + | 2010 | 0.68 | 0.981683 |
Target: 5'- cGGCACGGAgacggaGGCcgCCGGCGGggacgcgccGUGCg -3' miRNA: 3'- cCUGUGUCUa-----UCGa-GGUCGCCa--------CAUG- -5' |
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30176 | 3' | -52.5 | NC_006273.1 | + | 4570 | 0.66 | 0.993235 |
Target: 5'- cGGAUaACGcGGUGGCgacggCAGCGGUGgugGCg -3' miRNA: 3'- -CCUG-UGU-CUAUCGag---GUCGCCACa--UG- -5' |
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30176 | 3' | -52.5 | NC_006273.1 | + | 28584 | 0.66 | 0.992243 |
Target: 5'- cGGC-CAGc--GCUCUaagcgaGGCGGUGUGCg -3' miRNA: 3'- cCUGuGUCuauCGAGG------UCGCCACAUG- -5' |
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30176 | 3' | -52.5 | NC_006273.1 | + | 28837 | 0.67 | 0.983636 |
Target: 5'- gGGGCAgCAGAggUAGCUggCCAGaCGcUGUGCa -3' miRNA: 3'- -CCUGU-GUCU--AUCGA--GGUC-GCcACAUG- -5' |
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30176 | 3' | -52.5 | NC_006273.1 | + | 29601 | 0.69 | 0.962845 |
Target: 5'- aGACGCAGuuccGUUcCCGGCGG-GUACg -3' miRNA: 3'- cCUGUGUCuau-CGA-GGUCGCCaCAUG- -5' |
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30176 | 3' | -52.5 | NC_006273.1 | + | 29808 | 0.72 | 0.871611 |
Target: 5'- cGGGC-CAGGUAGUagaCGGCGGUGUccucGCg -3' miRNA: 3'- -CCUGuGUCUAUCGag-GUCGCCACA----UG- -5' |
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30176 | 3' | -52.5 | NC_006273.1 | + | 33256 | 0.68 | 0.981683 |
Target: 5'- cGACgGCGGGUccgAGUUCCAGCGGggccuUGCg -3' miRNA: 3'- cCUG-UGUCUA---UCGAGGUCGCCac---AUG- -5' |
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30176 | 3' | -52.5 | NC_006273.1 | + | 34640 | 0.69 | 0.955604 |
Target: 5'- uGGAC-CAGAcAGCUgCGGCGaaUGUACa -3' miRNA: 3'- -CCUGuGUCUaUCGAgGUCGCc-ACAUG- -5' |
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30176 | 3' | -52.5 | NC_006273.1 | + | 36745 | 0.71 | 0.905463 |
Target: 5'- cGGAgCuCAGAccgGGCUCCGGCGG-GUGg -3' miRNA: 3'- -CCU-GuGUCUa--UCGAGGUCGCCaCAUg -5' |
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30176 | 3' | -52.5 | NC_006273.1 | + | 38150 | 0.67 | 0.988698 |
Target: 5'- -cGCGCAGAaAGUgcgacagcuccgccgCCAGCGG-GUACa -3' miRNA: 3'- ccUGUGUCUaUCGa--------------GGUCGCCaCAUG- -5' |
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30176 | 3' | -52.5 | NC_006273.1 | + | 42221 | 0.67 | 0.987064 |
Target: 5'- cGGGCAgCGug-GGCUUCGGCGGccgGUGCc -3' miRNA: 3'- -CCUGU-GUcuaUCGAGGUCGCCa--CAUG- -5' |
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30176 | 3' | -52.5 | NC_006273.1 | + | 46049 | 0.66 | 0.990782 |
Target: 5'- gGGGCucauGCGGGUGGCcacccacccgCCGacgccgcaggugccGCGGUGUACg -3' miRNA: 3'- -CCUG----UGUCUAUCGa---------GGU--------------CGCCACAUG- -5' |
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30176 | 3' | -52.5 | NC_006273.1 | + | 48825 | 0.68 | 0.972097 |
Target: 5'- -cACACAGGgccugaAGCUCCuGCGGccacagGUGCg -3' miRNA: 3'- ccUGUGUCUa-----UCGAGGuCGCCa-----CAUG- -5' |
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30176 | 3' | -52.5 | NC_006273.1 | + | 54939 | 0.67 | 0.987064 |
Target: 5'- uGGGCugcaguCGGGUGGUggCGGCGGUG-GCg -3' miRNA: 3'- -CCUGu-----GUCUAUCGagGUCGCCACaUG- -5' |
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30176 | 3' | -52.5 | NC_006273.1 | + | 68023 | 0.66 | 0.992243 |
Target: 5'- gGGugGCGGA-GGaCUgCCGGCaGGUGUGg -3' miRNA: 3'- -CCugUGUCUaUC-GA-GGUCG-CCACAUg -5' |
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30176 | 3' | -52.5 | NC_006273.1 | + | 73261 | 0.66 | 0.992243 |
Target: 5'- cGGCGCAGAgccUGGUggaacucaUCagucGCGGUGUGCg -3' miRNA: 3'- cCUGUGUCU---AUCG--------AGgu--CGCCACAUG- -5' |
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30176 | 3' | -52.5 | NC_006273.1 | + | 77659 | 0.67 | 0.989911 |
Target: 5'- -cACGCAGAU-GCUCaCGGCGGcGcGCg -3' miRNA: 3'- ccUGUGUCUAuCGAG-GUCGCCaCaUG- -5' |
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30176 | 3' | -52.5 | NC_006273.1 | + | 82331 | 0.68 | 0.97726 |
Target: 5'- cGGACAcCAGAUAGggaaagagguuCUgCAGCGGcugcGUGCa -3' miRNA: 3'- -CCUGU-GUCUAUC-----------GAgGUCGCCa---CAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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