miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30176 3' -52.5 NC_006273.1 + 91234 0.7 0.938386
Target:  5'- cGGCGCGcGA-GGCUUCGGCGGcGUGCc -3'
miRNA:   3'- cCUGUGU-CUaUCGAGGUCGCCaCAUG- -5'
30176 3' -52.5 NC_006273.1 + 102534 0.69 0.955604
Target:  5'- gGGAUGCgAGAUgGGgUCCAGCaGcGUGUGCa -3'
miRNA:   3'- -CCUGUG-UCUA-UCgAGGUCG-C-CACAUG- -5'
30176 3' -52.5 NC_006273.1 + 103285 0.67 0.988556
Target:  5'- cGGGCAgCGGuc-GCUCCAGCaGcgGUGCc -3'
miRNA:   3'- -CCUGU-GUCuauCGAGGUCGcCa-CAUG- -5'
30176 3' -52.5 NC_006273.1 + 103417 0.72 0.871611
Target:  5'- cGGACAgGGAgcGUUCCAGCGGcGa-- -3'
miRNA:   3'- -CCUGUgUCUauCGAGGUCGCCaCaug -5'
30176 3' -52.5 NC_006273.1 + 104597 0.68 0.981683
Target:  5'- cGAUGCAGcUGGC-CCAGCGccUGUGCg -3'
miRNA:   3'- cCUGUGUCuAUCGaGGUCGCc-ACAUG- -5'
30176 3' -52.5 NC_006273.1 + 110753 0.68 0.97956
Target:  5'- aGGAUACAGGUcuGGUUaaaguguGGCGGUGUAg -3'
miRNA:   3'- -CCUGUGUCUA--UCGAgg-----UCGCCACAUg -5'
30176 3' -52.5 NC_006273.1 + 116212 0.66 0.994124
Target:  5'- -aACGCAGcgAGCU-CAGCGGcUGUccGCg -3'
miRNA:   3'- ccUGUGUCuaUCGAgGUCGCC-ACA--UG- -5'
30176 3' -52.5 NC_006273.1 + 123257 0.7 0.943041
Target:  5'- cGGCgACGGGUAGCcgCCAaaaGGUGUGCa -3'
miRNA:   3'- cCUG-UGUCUAUCGa-GGUcg-CCACAUG- -5'
30176 3' -52.5 NC_006273.1 + 137404 0.67 0.987064
Target:  5'- cGGACGCcugcGAcguUGGCUCucgCAGCccgaGGUGUGCg -3'
miRNA:   3'- -CCUGUGu---CU---AUCGAG---GUCG----CCACAUG- -5'
30176 3' -52.5 NC_006273.1 + 139549 0.68 0.97956
Target:  5'- -cGCGCAacauGAUGGCggCGGCGGUGgUGCg -3'
miRNA:   3'- ccUGUGU----CUAUCGagGUCGCCAC-AUG- -5'
30176 3' -52.5 NC_006273.1 + 141024 0.66 0.992243
Target:  5'- cGGcCcCGGAUGguGCUCCagGGCGGUGggACg -3'
miRNA:   3'- -CCuGuGUCUAU--CGAGG--UCGCCACa-UG- -5'
30176 3' -52.5 NC_006273.1 + 160421 0.69 0.953257
Target:  5'- aGGACGCGGAaaaagaauguccugGGCUaagCAGCGG-GUGCc -3'
miRNA:   3'- -CCUGUGUCUa-------------UCGAg--GUCGCCaCAUG- -5'
30176 3' -52.5 NC_006273.1 + 160552 0.7 0.938386
Target:  5'- aGGACGCGGAgcccgcGGCUgguaCgAGCGGUGgGCu -3'
miRNA:   3'- -CCUGUGUCUa-----UCGA----GgUCGCCACaUG- -5'
30176 3' -52.5 NC_006273.1 + 164650 1 0.034845
Target:  5'- cGGACACAGAUAGCUCCAGC-GUGUACg -3'
miRNA:   3'- -CCUGUGUCUAUCGAGGUCGcCACAUG- -5'
30176 3' -52.5 NC_006273.1 + 164798 0.66 0.993235
Target:  5'- uGGGCuuguagccaGCAGu--GCUCCAGCGGcGUu- -3'
miRNA:   3'- -CCUG---------UGUCuauCGAGGUCGCCaCAug -5'
30176 3' -52.5 NC_006273.1 + 167430 0.68 0.974774
Target:  5'- aGugGCGGGcgcGCUCuCGGCGGUcaGUACg -3'
miRNA:   3'- cCugUGUCUau-CGAG-GUCGCCA--CAUG- -5'
30176 3' -52.5 NC_006273.1 + 170492 0.68 0.97726
Target:  5'- cGGACACAuGUAGCcgUCCAGgucgcacgucuCGGUGgUGCc -3'
miRNA:   3'- -CCUGUGUcUAUCG--AGGUC-----------GCCAC-AUG- -5'
30176 3' -52.5 NC_006273.1 + 170935 0.67 0.986589
Target:  5'- gGGACgauguaccaguuuaAUAGGUcGCUCgCGGCcaGGUGUGCg -3'
miRNA:   3'- -CCUG--------------UGUCUAuCGAG-GUCG--CCACAUG- -5'
30176 3' -52.5 NC_006273.1 + 172427 0.68 0.97702
Target:  5'- uGACAcCAGAgaaucagaggagcUGGCaCCAGCGGUGgcCa -3'
miRNA:   3'- cCUGU-GUCU-------------AUCGaGGUCGCCACauG- -5'
30176 3' -52.5 NC_006273.1 + 188235 0.68 0.97726
Target:  5'- --uCAUuuGUAGCUCCAGCGcGUGUcGCa -3'
miRNA:   3'- ccuGUGucUAUCGAGGUCGC-CACA-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.