Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30176 | 3' | -52.5 | NC_006273.1 | + | 233043 | 0.67 | 0.988698 |
Target: 5'- -cGCGCAGAaAGUgcgacagcuccgccgCCAGCGG-GUACa -3' miRNA: 3'- ccUGUGUCUaUCGa--------------GGUCGCCaCAUG- -5' |
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30176 | 3' | -52.5 | NC_006273.1 | + | 231682 | 0.68 | 0.97956 |
Target: 5'- gGGGgGCAGGaAGCUUggUGGCGGUGUuCa -3' miRNA: 3'- -CCUgUGUCUaUCGAG--GUCGCCACAuG- -5' |
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30176 | 3' | -52.5 | NC_006273.1 | + | 221029 | 0.72 | 0.878829 |
Target: 5'- aGGcaGCGCGGggAGCUCCGGCGGcacaacUGCa -3' miRNA: 3'- -CC--UGUGUCuaUCGAGGUCGCCac----AUG- -5' |
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30176 | 3' | -52.5 | NC_006273.1 | + | 219812 | 0.68 | 0.975791 |
Target: 5'- gGGAUccaACAcGUAGCUCUgcgaguuggugucguAGCGGUGUAg -3' miRNA: 3'- -CCUG---UGUcUAUCGAGG---------------UCGCCACAUg -5' |
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30176 | 3' | -52.5 | NC_006273.1 | + | 215549 | 0.66 | 0.993235 |
Target: 5'- aGACGCacgcuggaaaAGAguGCUCCAGCcGGUGcgGCa -3' miRNA: 3'- cCUGUG----------UCUauCGAGGUCG-CCACa-UG- -5' |
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30176 | 3' | -52.5 | NC_006273.1 | + | 208817 | 0.74 | 0.788715 |
Target: 5'- uGGcGCACAGGUugAGC-CCGGCGGUGg-- -3' miRNA: 3'- -CC-UGUGUCUA--UCGaGGUCGCCACaug -5' |
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30176 | 3' | -52.5 | NC_006273.1 | + | 196903 | 0.68 | 0.981683 |
Target: 5'- cGGCACGGAgacggaGGCcgCCGGCGGggacgcgccGUGCg -3' miRNA: 3'- cCUGUGUCUa-----UCGa-GGUCGCCa--------CAUG- -5' |
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30176 | 3' | -52.5 | NC_006273.1 | + | 196824 | 0.66 | 0.994916 |
Target: 5'- uGGGCGCGGugcuGC-CCGcGCGGUGg-- -3' miRNA: 3'- -CCUGUGUCuau-CGaGGU-CGCCACaug -5' |
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30176 | 3' | -52.5 | NC_006273.1 | + | 196621 | 0.67 | 0.985427 |
Target: 5'- cGGACG-GGAgcuGCgCCGGCGGUGggccgGCa -3' miRNA: 3'- -CCUGUgUCUau-CGaGGUCGCCACa----UG- -5' |
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30176 | 3' | -52.5 | NC_006273.1 | + | 195369 | 0.68 | 0.97346 |
Target: 5'- cGGGCAauugcaugucgccCAGAaagaacgugguuGCUCCGGCGGcGUGCa -3' miRNA: 3'- -CCUGU-------------GUCUau----------CGAGGUCGCCaCAUG- -5' |
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30176 | 3' | -52.5 | NC_006273.1 | + | 193978 | 0.7 | 0.943041 |
Target: 5'- uGGugGCAGAUGGCggugUCCAcuugugcuugucGCGGcaGUGCa -3' miRNA: 3'- -CCugUGUCUAUCG----AGGU------------CGCCa-CAUG- -5' |
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30176 | 3' | -52.5 | NC_006273.1 | + | 188235 | 0.68 | 0.97726 |
Target: 5'- --uCAUuuGUAGCUCCAGCGcGUGUcGCa -3' miRNA: 3'- ccuGUGucUAUCGAGGUCGC-CACA-UG- -5' |
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30176 | 3' | -52.5 | NC_006273.1 | + | 172427 | 0.68 | 0.97702 |
Target: 5'- uGACAcCAGAgaaucagaggagcUGGCaCCAGCGGUGgcCa -3' miRNA: 3'- cCUGU-GUCU-------------AUCGaGGUCGCCACauG- -5' |
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30176 | 3' | -52.5 | NC_006273.1 | + | 170935 | 0.67 | 0.986589 |
Target: 5'- gGGACgauguaccaguuuaAUAGGUcGCUCgCGGCcaGGUGUGCg -3' miRNA: 3'- -CCUG--------------UGUCUAuCGAG-GUCG--CCACAUG- -5' |
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30176 | 3' | -52.5 | NC_006273.1 | + | 170492 | 0.68 | 0.97726 |
Target: 5'- cGGACACAuGUAGCcgUCCAGgucgcacgucuCGGUGgUGCc -3' miRNA: 3'- -CCUGUGUcUAUCG--AGGUC-----------GCCAC-AUG- -5' |
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30176 | 3' | -52.5 | NC_006273.1 | + | 167430 | 0.68 | 0.974774 |
Target: 5'- aGugGCGGGcgcGCUCuCGGCGGUcaGUACg -3' miRNA: 3'- cCugUGUCUau-CGAG-GUCGCCA--CAUG- -5' |
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30176 | 3' | -52.5 | NC_006273.1 | + | 164798 | 0.66 | 0.993235 |
Target: 5'- uGGGCuuguagccaGCAGu--GCUCCAGCGGcGUu- -3' miRNA: 3'- -CCUG---------UGUCuauCGAGGUCGCCaCAug -5' |
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30176 | 3' | -52.5 | NC_006273.1 | + | 164650 | 1 | 0.034845 |
Target: 5'- cGGACACAGAUAGCUCCAGC-GUGUACg -3' miRNA: 3'- -CCUGUGUCUAUCGAGGUCGcCACAUG- -5' |
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30176 | 3' | -52.5 | NC_006273.1 | + | 160552 | 0.7 | 0.938386 |
Target: 5'- aGGACGCGGAgcccgcGGCUgguaCgAGCGGUGgGCu -3' miRNA: 3'- -CCUGUGUCUa-----UCGA----GgUCGCCACaUG- -5' |
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30176 | 3' | -52.5 | NC_006273.1 | + | 160421 | 0.69 | 0.953257 |
Target: 5'- aGGACGCGGAaaaagaauguccugGGCUaagCAGCGG-GUGCc -3' miRNA: 3'- -CCUGUGUCUa-------------UCGAg--GUCGCCaCAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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