miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30176 3' -52.5 NC_006273.1 + 36745 0.71 0.905463
Target:  5'- cGGAgCuCAGAccgGGCUCCGGCGG-GUGg -3'
miRNA:   3'- -CCU-GuGUCUa--UCGAGGUCGCCaCAUg -5'
30176 3' -52.5 NC_006273.1 + 38150 0.67 0.988698
Target:  5'- -cGCGCAGAaAGUgcgacagcuccgccgCCAGCGG-GUACa -3'
miRNA:   3'- ccUGUGUCUaUCGa--------------GGUCGCCaCAUG- -5'
30176 3' -52.5 NC_006273.1 + 2010 0.68 0.981683
Target:  5'- cGGCACGGAgacggaGGCcgCCGGCGGggacgcgccGUGCg -3'
miRNA:   3'- cCUGUGUCUa-----UCGa-GGUCGCCa--------CAUG- -5'
30176 3' -52.5 NC_006273.1 + 170492 0.68 0.97726
Target:  5'- cGGACACAuGUAGCcgUCCAGgucgcacgucuCGGUGgUGCc -3'
miRNA:   3'- -CCUGUGUcUAUCG--AGGUC-----------GCCAC-AUG- -5'
30176 3' -52.5 NC_006273.1 + 195369 0.68 0.97346
Target:  5'- cGGGCAauugcaugucgccCAGAaagaacgugguuGCUCCGGCGGcGUGCa -3'
miRNA:   3'- -CCUGU-------------GUCUau----------CGAGGUCGCCaCAUG- -5'
30176 3' -52.5 NC_006273.1 + 160421 0.69 0.953257
Target:  5'- aGGACGCGGAaaaagaauguccugGGCUaagCAGCGG-GUGCc -3'
miRNA:   3'- -CCUGUGUCUa-------------UCGAg--GUCGCCaCAUG- -5'
30176 3' -52.5 NC_006273.1 + 1932 0.66 0.994916
Target:  5'- uGGGCGCGGugcuGC-CCGcGCGGUGg-- -3'
miRNA:   3'- -CCUGUGUCuau-CGaGGU-CGCCACaug -5'
30176 3' -52.5 NC_006273.1 + 68023 0.66 0.992243
Target:  5'- gGGugGCGGA-GGaCUgCCGGCaGGUGUGg -3'
miRNA:   3'- -CCugUGUCUaUC-GA-GGUCG-CCACAUg -5'
30176 3' -52.5 NC_006273.1 + 170935 0.67 0.986589
Target:  5'- gGGACgauguaccaguuuaAUAGGUcGCUCgCGGCcaGGUGUGCg -3'
miRNA:   3'- -CCUG--------------UGUCUAuCGAG-GUCG--CCACAUG- -5'
30176 3' -52.5 NC_006273.1 + 188235 0.68 0.97726
Target:  5'- --uCAUuuGUAGCUCCAGCGcGUGUcGCa -3'
miRNA:   3'- ccuGUGucUAUCGAGGUCGC-CACA-UG- -5'
30176 3' -52.5 NC_006273.1 + 160552 0.7 0.938386
Target:  5'- aGGACGCGGAgcccgcGGCUgguaCgAGCGGUGgGCu -3'
miRNA:   3'- -CCUGUGUCUa-----UCGA----GgUCGCCACaUG- -5'
30176 3' -52.5 NC_006273.1 + 141024 0.66 0.992243
Target:  5'- cGGcCcCGGAUGguGCUCCagGGCGGUGggACg -3'
miRNA:   3'- -CCuGuGUCUAU--CGAGG--UCGCCACa-UG- -5'
30176 3' -52.5 NC_006273.1 + 91234 0.7 0.938386
Target:  5'- cGGCGCGcGA-GGCUUCGGCGGcGUGCc -3'
miRNA:   3'- cCUGUGU-CUaUCGAGGUCGCCaCAUG- -5'
30176 3' -52.5 NC_006273.1 + 1729 0.67 0.985427
Target:  5'- cGGACG-GGAgcuGCgCCGGCGGUGggccgGCa -3'
miRNA:   3'- -CCUGUgUCUau-CGaGGUCGCCACa----UG- -5'
30176 3' -52.5 NC_006273.1 + 164798 0.66 0.993235
Target:  5'- uGGGCuuguagccaGCAGu--GCUCCAGCGGcGUu- -3'
miRNA:   3'- -CCUG---------UGUCuauCGAGGUCGCCaCAug -5'
30176 3' -52.5 NC_006273.1 + 123257 0.7 0.943041
Target:  5'- cGGCgACGGGUAGCcgCCAaaaGGUGUGCa -3'
miRNA:   3'- cCUG-UGUCUAUCGa-GGUcg-CCACAUG- -5'
30176 3' -52.5 NC_006273.1 + 46049 0.66 0.990782
Target:  5'- gGGGCucauGCGGGUGGCcacccacccgCCGacgccgcaggugccGCGGUGUACg -3'
miRNA:   3'- -CCUG----UGUCUAUCGa---------GGU--------------CGCCACAUG- -5'
30176 3' -52.5 NC_006273.1 + 110753 0.68 0.97956
Target:  5'- aGGAUACAGGUcuGGUUaaaguguGGCGGUGUAg -3'
miRNA:   3'- -CCUGUGUCUA--UCGAgg-----UCGCCACAUg -5'
30176 3' -52.5 NC_006273.1 + 82331 0.68 0.97726
Target:  5'- cGGACAcCAGAUAGggaaagagguuCUgCAGCGGcugcGUGCa -3'
miRNA:   3'- -CCUGU-GUCUAUC-----------GAgGUCGCCa---CAUG- -5'
30176 3' -52.5 NC_006273.1 + 172427 0.68 0.97702
Target:  5'- uGACAcCAGAgaaucagaggagcUGGCaCCAGCGGUGgcCa -3'
miRNA:   3'- cCUGU-GUCU-------------AUCGaGGUCGCCACauG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.