miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30176 5' -53.9 NC_006273.1 + 84329 0.66 0.991003
Target:  5'- cGGGcUGCugguuuCCAUggccgaguacCgcagCGAGUUGCUGUGCa -3'
miRNA:   3'- -CCC-AUGu-----GGUA----------Ga---GCUCAACGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 147849 0.66 0.991003
Target:  5'- uGGUGCgcggugACCGUCUgccgccggcUGAGgugcgUGCUGUGCa -3'
miRNA:   3'- cCCAUG------UGGUAGA---------GCUCa----ACGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 100908 0.66 0.991003
Target:  5'- aGGUAC-CCGa--CGAGgcggcGCCGCGCu -3'
miRNA:   3'- cCCAUGuGGUagaGCUCaa---CGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 29306 0.66 0.991003
Target:  5'- aGGGcUACGCgga-UCGAG-UGCCGaCGCc -3'
miRNA:   3'- -CCC-AUGUGguagAGCUCaACGGC-GCG- -5'
30176 5' -53.9 NC_006273.1 + 183753 0.66 0.990887
Target:  5'- cGGGUgcuguccGCGCCG-C-CGAGccUGCCGuCGCc -3'
miRNA:   3'- -CCCA-------UGUGGUaGaGCUCa-ACGGC-GCG- -5'
30176 5' -53.9 NC_006273.1 + 64743 0.66 0.989792
Target:  5'- uGGGUucauGCuGCCuAUCUaCGAGacgGCCGCGa -3'
miRNA:   3'- -CCCA----UG-UGG-UAGA-GCUCaa-CGGCGCg -5'
30176 5' -53.9 NC_006273.1 + 31269 0.66 0.989792
Target:  5'- aGGUcaACAaCCAgagccgUUCGGGgcgugcgGCCGCGCu -3'
miRNA:   3'- cCCA--UGU-GGUa-----GAGCUCaa-----CGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 25704 0.66 0.988458
Target:  5'- cGGUACGuuggUCAUCUCG----GCCGCGUu -3'
miRNA:   3'- cCCAUGU----GGUAGAGCucaaCGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 197286 0.66 0.988458
Target:  5'- uGGGgcgcgagucgGCGCCcgCcgcCGAG--GCCGCGCg -3'
miRNA:   3'- -CCCa---------UGUGGuaGa--GCUCaaCGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 2393 0.66 0.988458
Target:  5'- uGGGgcgcgagucgGCGCCcgCcgcCGAG--GCCGCGCg -3'
miRNA:   3'- -CCCa---------UGUGGuaGa--GCUCaaCGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 194164 0.66 0.988317
Target:  5'- cGGUgacacaaACAgCGUCUCGGGacGCCGCu- -3'
miRNA:   3'- cCCA-------UGUgGUAGAGCUCaaCGGCGcg -5'
30176 5' -53.9 NC_006273.1 + 600 0.66 0.986992
Target:  5'- aGGGUGCGCg--CUCGGGgacccaGuCCGCGg -3'
miRNA:   3'- -CCCAUGUGguaGAGCUCaa----C-GGCGCg -5'
30176 5' -53.9 NC_006273.1 + 33414 0.66 0.986992
Target:  5'- ---cGCACCGcCUCGGGcgucgGCgGCGCg -3'
miRNA:   3'- cccaUGUGGUaGAGCUCaa---CGgCGCG- -5'
30176 5' -53.9 NC_006273.1 + 195493 0.66 0.986992
Target:  5'- aGGGUGCGCg--CUCGGGgacccaGuCCGCGg -3'
miRNA:   3'- -CCCAUGUGguaGAGCUCaa----C-GGCGCg -5'
30176 5' -53.9 NC_006273.1 + 31979 0.66 0.986992
Target:  5'- uGGUGCGCgAUC-CGcuGUUGCgcgaccCGCGCg -3'
miRNA:   3'- cCCAUGUGgUAGaGCu-CAACG------GCGCG- -5'
30176 5' -53.9 NC_006273.1 + 118089 0.66 0.986046
Target:  5'- cGGG-AUGCCAUUcaCGAGcUgaaacgcgaucuguuUGCCGCGCg -3'
miRNA:   3'- -CCCaUGUGGUAGa-GCUC-A---------------ACGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 82909 0.66 0.985387
Target:  5'- aGGUGCGCuCGgagcggCUgGAGgcgcaGCUGCGCg -3'
miRNA:   3'- cCCAUGUG-GUa-----GAgCUCaa---CGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 13574 0.66 0.985387
Target:  5'- cGGGUGCucacccGCCGggcggCcCGGGccGCCGUGCu -3'
miRNA:   3'- -CCCAUG------UGGUa----GaGCUCaaCGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 140855 0.66 0.983635
Target:  5'- cGGUGCgcgGCCGcuUCUCGGGgcgcgaggUGCC-CGCc -3'
miRNA:   3'- cCCAUG---UGGU--AGAGCUCa-------ACGGcGCG- -5'
30176 5' -53.9 NC_006273.1 + 113492 0.66 0.983635
Target:  5'- uGGGUucggAUGCCGUagccggcggCGGGUUGCCcgggggGCGCg -3'
miRNA:   3'- -CCCA----UGUGGUAga-------GCUCAACGG------CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.