miRNA display CGI


Results 21 - 40 of 78 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30176 5' -53.9 NC_006273.1 + 45961 0.66 0.983635
Target:  5'- cGGGUGCugCuUCUgauaagCGuGgUGCCuGCGCg -3'
miRNA:   3'- -CCCAUGugGuAGA------GCuCaACGG-CGCG- -5'
30176 5' -53.9 NC_006273.1 + 103759 0.67 0.981728
Target:  5'- ---cGCGCCGguaCUCGAGcaaCCGCGCg -3'
miRNA:   3'- cccaUGUGGUa--GAGCUCaacGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 92663 0.67 0.979659
Target:  5'- ---aGCACCGUCUCGcugUGCuuaCGCGCc -3'
miRNA:   3'- cccaUGUGGUAGAGCucaACG---GCGCG- -5'
30176 5' -53.9 NC_006273.1 + 131327 0.67 0.971594
Target:  5'- aGGGccaguacaGCACCAUCUCcaccguggagGAGUacgugcgcagcuucUGCaCGCGCg -3'
miRNA:   3'- -CCCa-------UGUGGUAGAG----------CUCA--------------ACG-GCGCG- -5'
30176 5' -53.9 NC_006273.1 + 214060 0.67 0.979659
Target:  5'- cGGGUu--CCG-CUCGcGGUUGCgguCGCGCa -3'
miRNA:   3'- -CCCAuguGGUaGAGC-UCAACG---GCGCG- -5'
30176 5' -53.9 NC_006273.1 + 68538 0.67 0.975007
Target:  5'- uGG-ACugCAUC-CGuccGGUggUGCCGCGCu -3'
miRNA:   3'- cCCaUGugGUAGaGC---UCA--ACGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 178717 0.67 0.981728
Target:  5'- uGGGUcCGCUA-CUCGuggcGUUGUCGaCGCu -3'
miRNA:   3'- -CCCAuGUGGUaGAGCu---CAACGGC-GCG- -5'
30176 5' -53.9 NC_006273.1 + 49619 0.67 0.979659
Target:  5'- uGGUggGCGCCAgCUCGuAGaUGCaguCGCGCa -3'
miRNA:   3'- cCCA--UGUGGUaGAGC-UCaACG---GCGCG- -5'
30176 5' -53.9 NC_006273.1 + 21537 0.67 0.975007
Target:  5'- cGGGcGCuggCGUUUCGAGgacgGCgGCGCg -3'
miRNA:   3'- -CCCaUGug-GUAGAGCUCaa--CGgCGCG- -5'
30176 5' -53.9 NC_006273.1 + 118773 0.67 0.97241
Target:  5'- cGGUACGCaCGUCgcCGuccauGUcGCUGCGCa -3'
miRNA:   3'- cCCAUGUG-GUAGa-GCu----CAaCGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 87905 0.68 0.966642
Target:  5'- cGGGcACGCCGaagcaaaUgGAGUUGCC-CGCg -3'
miRNA:   3'- -CCCaUGUGGUag-----AgCUCAACGGcGCG- -5'
30176 5' -53.9 NC_006273.1 + 133147 0.68 0.956472
Target:  5'- cGGGUGCuaagaagcuGCUcuugCUCGAcgUGCCGCGUc -3'
miRNA:   3'- -CCCAUG---------UGGua--GAGCUcaACGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 101264 0.68 0.956472
Target:  5'- aGGUA-GCCAUCgcCGAGUgcGCgGCGCa -3'
miRNA:   3'- cCCAUgUGGUAGa-GCUCAa-CGgCGCG- -5'
30176 5' -53.9 NC_006273.1 + 141446 0.68 0.960071
Target:  5'- aGGGcGCGCC-UCccgCGGGUccugGcCCGCGCa -3'
miRNA:   3'- -CCCaUGUGGuAGa--GCUCAa---C-GGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 58204 0.68 0.956472
Target:  5'- ---cACACCGUCuccuccUCGAacacggUGCCGCGCg -3'
miRNA:   3'- cccaUGUGGUAG------AGCUca----ACGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 181666 0.68 0.963459
Target:  5'- cGGcagUGCCGUCUCGGGU--CCGUGCa -3'
miRNA:   3'- cCCau-GUGGUAGAGCUCAacGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 53772 0.68 0.956472
Target:  5'- -cGUGCACCGUCUgggcCGGGcaauccuggUGuuGCGCg -3'
miRNA:   3'- ccCAUGUGGUAGA----GCUCa--------ACggCGCG- -5'
30176 5' -53.9 NC_006273.1 + 90927 0.68 0.966642
Target:  5'- cGGGUacaacggcacgcGCACCGcCUCGcc--GCCGUGCa -3'
miRNA:   3'- -CCCA------------UGUGGUaGAGCucaaCGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 104100 0.68 0.963459
Target:  5'- uGGGU-CAUguUCUUGGGaaGCCGCGg -3'
miRNA:   3'- -CCCAuGUGguAGAGCUCaaCGGCGCg -5'
30176 5' -53.9 NC_006273.1 + 188887 0.68 0.966642
Target:  5'- uGGGU-CAaCAUCUCGAGcaGCagGCGCc -3'
miRNA:   3'- -CCCAuGUgGUAGAGCUCaaCGg-CGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.